Analysis of interatomic Contacts of Structural Units in PDB entry:
6M3I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M3I entry

There are 2 chains in PDB entry 6M3I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 30ALA 345
B
 SER 663TRP 1014
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6M3I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 46Right-handed alpha
Helix 2
AA2
A
50 64Right-handed alpha
Helix 3
AA3
A
67 71Right-handed 310
Helix 4
AA4
A
72 77Right-handed alpha
Helix 5
AA5
A
82 88Right-handed alpha
Helix 6
AA6
A
160 174Right-handed alpha
Helix 7
AA7
A
178 200Right-handed alpha
Helix 8
AA8
A
207 215Right-handed alpha
Helix 9
AA9
A
244 258Right-handed alpha
Helix 10
AB1
A
260 268Right-handed alpha
Helix 11
AB2
A
268 284Right-handed alpha
Helix 12
AB3
A
287 301Right-handed alpha
Helix 13
AB4
A
302 304Right-handed 310
Helix 14
AB5
A
305 320Right-handed alpha
Helix 15
AB6
A
322 334Right-handed alpha
Helix 16
AB7
B
666 677Right-handed alpha
Helix 17
AB8
B
789 797Right-handed alpha
Helix 18
AB9
B
808 821Right-handed alpha
Helix 19
AC1
B
843 849Right-handed alpha
Helix 20
AC2
B
850 854Right-handed 310
Helix 21
AC3
B
865 867Right-handed 310
Helix 22
AC4
B
868 876Right-handed alpha
Helix 23
AC5
B
900 907Right-handed alpha
Helix 24
AC6
B
958 961Right-handed 310
Helix 25
AC7
B
993 995Right-handed 310
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There are 5 sheets in PDB entry 6M3I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
115 120anti-parallel
Strand 3
A
127 132anti-parallel
Strand 4
A
142 147anti-parallel
Strand 5
A
155 156anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
799 803first strand
Strand 2
B
829 841anti-parallel
Strand 3
B
997 1009anti-parallel
Strand 4
B
916 925anti-parallel
Strand 5
B
857 864anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
895 897first strand
Strand 2
B
988 991anti-parallel
Strand 3
B
947 950anti-parallel
Strand 4
B
929 932parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
974 976first strand
Strand 2
B
952 956anti-parallel
Strand 3
B
984 986parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
962 964first strand
Strand 2
B
967 969anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il