Analysis of interatomic Contacts of Structural Units in PDB entry:
6M3L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M3L entry

There are 3 chains in PDB entry 6M3L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 8ILE 223
B
 PRO 27ILE 222
C
 T -7 T 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6M3L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 58Right-handed 310
Helix 2
AA2
A
77 88Right-handed alpha
Helix 3
AA3
A
92 106Right-handed alpha
Helix 4
AA4
A
109 114Right-handed 310
Helix 5
AA5
A
171 173Right-handed 310
Helix 6
AA6
A
193 208Right-handed alpha
Helix 7
AA7
A
208 222Right-handed alpha
Helix 8
AA8
B
54 58Right-handed 310
Helix 9
AA9
B
77 88Right-handed alpha
Helix 10
AB1
B
92 106Right-handed alpha
Helix 11
AB2
B
109 114Right-handed alpha
Helix 12
AB3
B
193 208Right-handed alpha
Helix 13
AB4
B
208 220Right-handed alpha
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There are 3 sheets in PDB entry 6M3L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
187 192anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
60 66anti-parallel
Strand 4
A
160 169anti-parallel
Strand 5
A
146 153anti-parallel
Strand 6
A
127 140anti-parallel
Strand 7
B
128 140anti-parallel
Strand 8
B
146 153anti-parallel
Strand 9
B
160 169anti-parallel
Strand 10
B
60 66anti-parallel
Strand 11
B
31 35anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 124first strand
Strand 2
A
127 140anti-parallel
Strand 3
B
128 140anti-parallel
Strand 4
B
116 123anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il