Analysis of interatomic Contacts of Structural Units in PDB entry:
6M3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M3P entry

There are 4 chains in PDB entry 6M3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 VAL 960ALA 1425
A
 ALA 11THR 320
C
 VAL 960HIS 1422
B
 ALA 11THR 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6M3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
1081 1087Right-handed alpha
Helix 2
AA2
E
1097 1105Right-handed alpha
Helix 3
AA3
E
1169 1176Right-handed alpha
Helix 4
AA4
E
1244 1247Right-handed 310
Helix 5
AA5
E
1276 1289Right-handed alpha
Helix 6
AA6
E
1323 1329Right-handed alpha
Helix 7
AA7
A
12 26Right-handed alpha
Helix 8
AA8
A
34 67Right-handed alpha
Helix 9
AA9
A
75 133Right-handed alpha
Helix 10
AB1
A
139 179Right-handed alpha
Helix 11
AB2
A
184 238Right-handed alpha
Helix 12
AB3
A
248 258Right-handed alpha
Helix 13
AB4
A
258 284Right-handed alpha
Helix 14
AB5
A
286 312Right-handed alpha
Helix 15
AB6
C
1081 1087Right-handed alpha
Helix 16
AB7
C
1097 1105Right-handed alpha
Helix 17
AB8
C
1169 1176Right-handed alpha
Helix 18
AB9
C
1244 1247Right-handed 310
Helix 19
AC1
C
1276 1289Right-handed alpha
Helix 20
AC2
C
1323 1329Right-handed alpha
Helix 21
AC3
B
12 26Right-handed alpha
Helix 22
AC4
B
34 67Right-handed alpha
Helix 23
AC5
B
75 133Right-handed alpha
Helix 24
AC6
B
139 179Right-handed alpha
Helix 25
AC7
B
184 238Right-handed alpha
Helix 26
AC8
B
248 258Right-handed alpha
Helix 27
AC9
B
258 284Right-handed alpha
Helix 28
AD1
B
286 312Right-handed alpha
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There are 17 sheets in PDB entry 6M3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
964 968first strand
Strand 2
E
979 983parallel
Strand 3
E
990 993anti-parallel
Strand 4
E
1039 1049anti-parallel
Strand 5
E
1106 1113anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
971 974first strand
Strand 2
E
1002 1008anti-parallel
Strand 3
E
1025 1033anti-parallel
Strand 4
E
1117 1124anti-parallel
Strand 5
E
1059 1066anti-parallel
Strand 6
E
1072 1074anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1127 1129first strand
Strand 2
E
1161 1166anti-parallel
Strand 3
E
1186 1189anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1138 1139first strand
Strand 2
E
1147 1149anti-parallel
Strand 3
E
1194 1205anti-parallel
Strand 4
E
1255 1262anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1138 1139first strand
Strand 2
E
1147 1149anti-parallel
Strand 3
E
1194 1205anti-parallel
Strand 4
B
316 317parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1182 1183first strand
Strand 2
E
1265 1270anti-parallel
Strand 3
E
1225 1230anti-parallel
Strand 4
E
1241 1242anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1332 1335first strand
Strand 2
E
1292 1301anti-parallel
Strand 3
E
1340 1343anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1332 1335first strand
Strand 2
E
1292 1301anti-parallel
Strand 3
E
1311 1316anti-parallel
Strand 4
E
1376 1380anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1367 1369first strand
Strand 2
E
1347 1353anti-parallel
Strand 3
E
1393 1398anti-parallel
Strand 4
E
1413 1417anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
964 968first strand
Strand 2
C
979 983parallel
Strand 3
C
990 993anti-parallel
Strand 4
C
1039 1049anti-parallel
Strand 5
C
1106 1113anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
971 974first strand
Strand 2
C
1002 1008anti-parallel
Strand 3
C
1025 1033anti-parallel
Strand 4
C
1117 1124anti-parallel
Strand 5
C
1059 1066anti-parallel
Strand 6
C
1072 1074anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1127 1129first strand
Strand 2
C
1161 1166anti-parallel
Strand 3
C
1186 1189anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1138 1139first strand
Strand 2
C
1147 1149anti-parallel
Strand 3
C
1195 1205anti-parallel
Strand 4
C
1255 1262anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1182 1183first strand
Strand 2
C
1265 1270anti-parallel
Strand 3
C
1225 1230anti-parallel
Strand 4
C
1241 1242anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1332 1336first strand
Strand 2
C
1292 1301anti-parallel
Strand 3
C
1340 1343anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1332 1336first strand
Strand 2
C
1292 1301anti-parallel
Strand 3
C
1311 1316anti-parallel
Strand 4
C
1376 1380anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1367 1369first strand
Strand 2
C
1347 1353anti-parallel
Strand 3
C
1393 1398anti-parallel
Strand 4
C
1413 1417anti-parallel
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