Analysis of interatomic Contacts of Structural Units in PDB entry:
6M3Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M3Q entry

There are 2 chains in PDB entry 6M3Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 LEU 954GLU 1458
F
 PHE 1584ALA 1897
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6M3Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
1113 1122Right-handed alpha
Helix 2
AA2
E
1130 1138Right-handed alpha
Helix 3
AA3
E
1202 1211Right-handed alpha
Helix 4
AA4
E
1306 1308Right-handed 310
Helix 5
AA5
E
1309 1322Right-handed alpha
Helix 6
AA6
E
1356 1362Right-handed alpha
Helix 7
AA7
F
1585 1608Right-handed alpha
Helix 8
AA8
F
1615 1636Right-handed alpha
Helix 9
AA9
F
1636 1651Right-handed alpha
Helix 10
AB1
F
1657 1714Right-handed alpha
Helix 11
AB2
F
1721 1761Right-handed alpha
Helix 12
AB3
F
1764 1816Right-handed alpha
Helix 13
AB4
F
1817 1820Right-handed 310
Helix 14
AB5
F
1834 1868Right-handed alpha
Helix 15
AB6
F
1869 1897Right-handed alpha
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There are 8 sheets in PDB entry 6M3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
964 968first strand
Strand 2
E
979 983parallel
Strand 3
E
990 993anti-parallel
Strand 4
E
1039 1082anti-parallel
Strand 5
E
1139 1146anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
971 974first strand
Strand 2
E
1002 1009anti-parallel
Strand 3
E
1030 1034anti-parallel
Strand 4
E
1150 1157anti-parallel
Strand 5
E
1025 1026anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
971 974first strand
Strand 2
E
1002 1009anti-parallel
Strand 3
E
1030 1034anti-parallel
Strand 4
E
1150 1157anti-parallel
Strand 5
E
1092 1099anti-parallel
Strand 6
E
1106 1107anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1159 1164first strand
Strand 2
E
1192 1199anti-parallel
Strand 3
E
1219 1222anti-parallel
Strand 4
E
1298 1302anti-parallel
Strand 5
E
1259 1263anti-parallel
Strand 6
E
1274 1275anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1169 1172first strand
Strand 2
E
1180 1183anti-parallel
Strand 3
E
1228 1238anti-parallel
Strand 4
E
1288 1295anti-parallel
Strand 5
E
1283 1285anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1365 1369first strand
Strand 2
E
1325 1335anti-parallel
Strand 3
E
1373 1376anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1365 1369first strand
Strand 2
E
1325 1335anti-parallel
Strand 3
E
1341 1349anti-parallel
Strand 4
E
1410 1417anti-parallel
Strand 5
E
1389 1391anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1400 1402first strand
Strand 2
E
1380 1385anti-parallel
Strand 3
E
1425 1431anti-parallel
Strand 4
E
1446 1451anti-parallel
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