Analysis of interatomic Contacts of Structural Units in PDB entry:
6M40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M40 entry

There is 1 chain in PDB entry 6M40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 338ARG 735
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6M40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
351 364Right-handed alpha
Helix 2
AA2
A
376 386Right-handed alpha
Helix 3
AA3
A
414 424Right-handed alpha
Helix 4
AA4
A
443 458Right-handed alpha
Helix 5
AA5
A
499 511Right-handed alpha
Helix 6
AA6
A
528 538Right-handed alpha
Helix 7
AA7
A
551 559Right-handed alpha
Helix 8
AA8
A
573 576Right-handed 310
Helix 9
AA9
A
610 619Right-handed alpha
Helix 10
AB1
A
648 661Right-handed alpha
Helix 11
AB2
A
669 679Right-handed alpha
Helix 12
AB3
A
682 693Right-handed alpha
Helix 13
AB4
A
697 705Right-handed alpha
Helix 14
AB5
A
713 726Right-handed alpha
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There are 3 sheets in PDB entry 6M40. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 345first strand
Strand 2
A
466 470parallel
Strand 3
A
432 437parallel
Strand 4
A
369 374parallel
Strand 5
A
409 413parallel
Strand 6
A
393 396parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 496first strand
Strand 2
A
627 632parallel
Strand 3
A
585 588parallel
Strand 4
A
515 519parallel
Strand 5
A
567 571parallel
Strand 6
A
543 547parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 597first strand
Strand 2
A
602 608anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il