Analysis of interatomic Contacts of Structural Units in PDB entry:
6M48

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M48 entry

There are 2 chains in PDB entry 6M48 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 38	LEU 852
B	ASP 37	ASN 544

There are 23 helices in PDB entry 6M48. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	145	150	Right-handed 310
Helix 2	AA2	A	156	175	Right-handed alpha
Helix 3	AA3	A	195	198	Right-handed 310
Helix 4	AA4	A	210	222	Right-handed alpha
Helix 5	AA5	A	230	243	Right-handed alpha
Helix 6	AA6	A	310	324	Right-handed alpha
Helix 7	AA7	A	343	355	Right-handed alpha
Helix 8	AA8	A	357	359	Right-handed 310
Helix 9	AA9	A	366	384	Right-handed alpha
Helix 10	AB1	A	542	544	Right-handed 310
Helix 11	AB2	A	613	620	Right-handed alpha
Helix 12	AB3	B	145	149	Right-handed 310
Helix 13	AB4	B	156	175	Right-handed alpha
Helix 14	AB5	B	195	198	Right-handed 310
Helix 15	AB6	B	210	222	Right-handed alpha
Helix 16	AB7	B	230	243	Right-handed alpha
Helix 17	AB8	B	310	324	Right-handed alpha
Helix 18	AB9	B	343	355	Right-handed alpha
Helix 19	AC1	B	357	359	Right-handed 310
Helix 20	AC2	B	366	385	Right-handed alpha
Helix 21	AC3	B	419	423	Right-handed 310
Helix 22	AC4	B	542	544	Right-handed 310
Helix 23	AC5	B	613	620	Right-handed alpha

There are 30 sheets in PDB entry 6M48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	49	52	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	55	58	parallel
Strand 3	A	64	67	anti-parallel
Strand 4	A	490	491	anti-parallel
Strand 5	A	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	75	76	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	98	first strand
Strand 2	A	101	112	anti-parallel
Strand 3	A	118	126	anti-parallel
Strand 4	A	445	454	anti-parallel
Strand 5	A	401	403	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	98	first strand
Strand 2	A	101	112	anti-parallel
Strand 3	A	118	126	anti-parallel
Strand 4	A	445	454	anti-parallel
Strand 5	A	409	412	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	207	first strand
Strand 2	A	181	188	anti-parallel
Strand 3	A	136	143	parallel
Strand 4	A	250	257	parallel
Strand 5	A	327	333	parallel
Strand 6	A	361	364	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	273	first strand
Strand 2	A	276	287	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	300	first strand
Strand 2	A	306	309	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	429	first strand
Strand 2	A	432	440	anti-parallel
Strand 3	A	388	396	anti-parallel
Strand 4	A	474	476	anti-parallel
Strand 5	A	484	485	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	552	first strand
Strand 2	A	495	505	anti-parallel
Strand 3	A	590	597	parallel
Strand 4	A	578	585	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	540	first strand
Strand 2	A	515	523	anti-parallel
Strand 3	A	562	567	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	648	first strand
Strand 2	A	599	606	anti-parallel
Strand 3	A	722	729	parallel
Strand 4	A	709	716	anti-parallel
Strand 5	A	700	706	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	635	641	first strand
Strand 2	A	621	627	anti-parallel
Strand 3	A	652	660	anti-parallel
Strand 4	A	671	676	anti-parallel
Strand 5	A	682	687	anti-parallel
Strand 6	A	690	696	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	776	first strand
Strand 2	A	736	742	anti-parallel
Strand 3	A	842	848	parallel
Strand 4	A	834	839	anti-parallel
Strand 5	A	830	831	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	764	767	first strand
Strand 2	A	753	758	anti-parallel
Strand 3	A	786	793	anti-parallel
Strand 4	A	805	809	anti-parallel
Strand 5	A	816	820	anti-parallel
Strand 6	A	823	824	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	46	first strand
Strand 2	B	49	52	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	55	58	parallel
Strand 3	B	64	67	anti-parallel
Strand 4	B	490	491	anti-parallel
Strand 5	B	467	468	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	75	76	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	98	first strand
Strand 2	B	101	112	anti-parallel
Strand 3	B	118	126	anti-parallel
Strand 4	B	445	454	anti-parallel
Strand 5	B	401	403	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	98	first strand
Strand 2	B	101	112	anti-parallel
Strand 3	B	118	126	anti-parallel
Strand 4	B	445	454	anti-parallel
Strand 5	B	409	412	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	207	first strand
Strand 2	B	181	188	anti-parallel
Strand 3	B	136	143	parallel
Strand 4	B	250	257	parallel
Strand 5	B	327	333	parallel
Strand 6	B	361	364	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	273	first strand
Strand 2	B	276	287	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	300	first strand
Strand 2	B	306	309	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	429	first strand
Strand 2	B	432	440	anti-parallel
Strand 3	B	388	396	anti-parallel
Strand 4	B	474	476	anti-parallel
Strand 5	B	484	485	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	546	552	first strand
Strand 2	B	495	505	anti-parallel
Strand 3	B	590	606	parallel
Strand 4	B	647	649	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	578	585	first strand
Strand 2	B	590	606	anti-parallel
Strand 3	B	722	729	parallel
Strand 4	B	709	716	anti-parallel
Strand 5	B	700	706	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	540	first strand
Strand 2	B	515	523	anti-parallel
Strand 3	B	562	567	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	641	first strand
Strand 2	B	621	627	anti-parallel
Strand 3	B	652	660	anti-parallel
Strand 4	B	671	676	anti-parallel
Strand 5	B	682	687	anti-parallel
Strand 6	B	690	696	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	775	776	first strand
Strand 2	B	736	742	anti-parallel
Strand 3	B	842	848	parallel
Strand 4	B	834	839	anti-parallel
Strand 5	B	830	831	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	764	765	first strand
Strand 2	B	753	757	anti-parallel
Strand 3	B	786	793	anti-parallel
Strand 4	B	805	809	anti-parallel
Strand 5	B	816	819	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M48

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M48