Analysis of interatomic Contacts of Structural Units in PDB entry:
6M4B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M4B entry

There are 2 chains in PDB entry 6M4B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 19SER 225
B
 LEU 19SER 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6M4B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 51Right-handed alpha
Helix 2
AA2
A
66 79Right-handed alpha
Helix 3
AA3
A
97 105Right-handed alpha
Helix 4
AA4
A
136 154Right-handed alpha
Helix 5
AA5
A
157 167Right-handed alpha
Helix 6
AA6
A
172 179Right-handed alpha
Helix 7
AA7
A
188 197Right-handed alpha
Helix 8
AA8
B
34 51Right-handed alpha
Helix 9
AA9
B
66 80Right-handed alpha
Helix 10
AB1
B
97 105Right-handed alpha
Helix 11
AB2
B
136 154Right-handed alpha
Helix 12
AB3
B
157 167Right-handed alpha
Helix 13
AB4
B
172 179Right-handed alpha
Helix 14
AB5
B
188 197Right-handed alpha
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There are 6 sheets in PDB entry 6M4B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
108 111parallel
Strand 3
A
84 88parallel
Strand 4
A
55 61parallel
Strand 5
A
23 30parallel
Strand 6
A
218 221parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
116 118parallel
Strand 3
A
170 171anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
132 134anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 185first strand
Strand 2
B
108 111parallel
Strand 3
B
84 88parallel
Strand 4
B
55 61parallel
Strand 5
B
22 30parallel
Strand 6
B
217 221parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
116 118parallel
Strand 3
B
170 171anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 126first strand
Strand 2
B
132 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il