Analysis of interatomic Contacts of Structural Units in PDB entry:
6M4F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M4F entry

There are 4 chains in PDB entry 6M4F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 55	HIS 596
C	GLY 55	HIS 597
E	GLY 55	HIS 596
G	GLY 55	HIS 598

There are123 helices in PDB entry 6M4F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	67	Right-handed alpha
Helix 2	AA2	A	103	107	Right-handed 310
Helix 3	AA3	A	122	127	Right-handed alpha
Helix 4	AA4	A	131	135	Right-handed 310
Helix 5	AA5	A	138	147	Right-handed alpha
Helix 6	AA6	A	147	152	Right-handed alpha
Helix 7	AA7	A	162	177	Right-handed alpha
Helix 8	AA8	A	187	192	Right-handed alpha
Helix 9	AA9	A	200	217	Right-handed alpha
Helix 10	AB1	A	231	239	Right-handed alpha
Helix 11	AB2	A	240	243	Right-handed 310
Helix 12	AB3	A	246	264	Right-handed alpha
Helix 13	AB4	A	275	283	Right-handed alpha
Helix 14	AB5	A	287	291	Right-handed 310
Helix 15	AB6	A	299	326	Right-handed alpha
Helix 16	AB7	A	350	365	Right-handed alpha
Helix 17	AB8	A	365	374	Right-handed alpha
Helix 18	AB9	A	379	387	Right-handed alpha
Helix 19	AC1	A	388	390	Right-handed 310
Helix 20	AC2	A	394	402	Right-handed alpha
Helix 21	AC3	A	424	430	Right-handed alpha
Helix 22	AC4	A	444	449	Right-handed alpha
Helix 23	AC5	A	462	466	Right-handed 310
Helix 24	AC6	A	471	473	Right-handed 310
Helix 25	AC7	A	474	486	Right-handed alpha
Helix 26	AC8	A	503	507	Right-handed 310
Helix 27	AC9	A	509	515	Right-handed alpha
Helix 28	AD1	A	516	538	Right-handed alpha
Helix 29	AD2	A	554	561	Right-handed 310
Helix 30	AD3	A	580	594	Right-handed alpha
Helix 31	AD4	C	56	67	Right-handed alpha
Helix 32	AD5	C	94	99	Right-handed 310
Helix 33	AD6	C	103	107	Right-handed 310
Helix 34	AD7	C	122	127	Right-handed alpha
Helix 35	AD8	C	131	135	Right-handed 310
Helix 36	AD9	C	138	147	Right-handed alpha
Helix 37	AE1	C	147	152	Right-handed alpha
Helix 38	AE2	C	162	177	Right-handed alpha
Helix 39	AE3	C	187	192	Right-handed alpha
Helix 40	AE4	C	200	217	Right-handed alpha
Helix 41	AE5	C	231	239	Right-handed alpha
Helix 42	AE6	C	240	243	Right-handed 310
Helix 43	AE7	C	246	264	Right-handed alpha
Helix 44	AE8	C	275	283	Right-handed alpha
Helix 45	AE9	C	287	291	Right-handed 310
Helix 46	AF1	C	299	326	Right-handed alpha
Helix 47	AF2	C	350	365	Right-handed alpha
Helix 48	AF3	C	365	374	Right-handed alpha
Helix 49	AF4	C	379	387	Right-handed alpha
Helix 50	AF5	C	388	390	Right-handed 310
Helix 51	AF6	C	394	402	Right-handed alpha
Helix 52	AF7	C	424	430	Right-handed alpha
Helix 53	AF8	C	444	449	Right-handed alpha
Helix 54	AF9	C	462	466	Right-handed 310
Helix 55	AG1	C	471	473	Right-handed 310
Helix 56	AG2	C	474	486	Right-handed alpha
Helix 57	AG3	C	503	507	Right-handed 310
Helix 58	AG4	C	509	515	Right-handed alpha
Helix 59	AG5	C	516	538	Right-handed alpha
Helix 60	AG6	C	554	561	Right-handed 310
Helix 61	AG7	C	580	594	Right-handed alpha
Helix 62	AG8	E	56	67	Right-handed alpha
Helix 63	AG9	E	94	99	Right-handed 310
Helix 64	AH1	E	103	107	Right-handed 310
Helix 65	AH2	E	122	127	Right-handed alpha
Helix 66	AH3	E	131	135	Right-handed 310
Helix 67	AH4	E	138	147	Right-handed alpha
Helix 68	AH5	E	147	152	Right-handed alpha
Helix 69	AH6	E	162	177	Right-handed alpha
Helix 70	AH7	E	187	192	Right-handed alpha
Helix 71	AH8	E	200	217	Right-handed alpha
Helix 72	AH9	E	231	239	Right-handed alpha
Helix 73	AI1	E	240	243	Right-handed 310
Helix 74	AI2	E	246	264	Right-handed alpha
Helix 75	AI3	E	275	283	Right-handed alpha
Helix 76	AI4	E	287	291	Right-handed 310
Helix 77	AI5	E	300	326	Right-handed alpha
Helix 78	AI6	E	350	365	Right-handed alpha
Helix 79	AI7	E	365	374	Right-handed alpha
Helix 80	AI8	E	379	387	Right-handed alpha
Helix 81	AI9	E	388	390	Right-handed 310
Helix 82	AJ1	E	394	402	Right-handed alpha
Helix 83	AJ2	E	424	430	Right-handed alpha
Helix 84	AJ3	E	444	449	Right-handed alpha
Helix 85	AJ4	E	462	466	Right-handed 310
Helix 86	AJ5	E	471	473	Right-handed 310
Helix 87	AJ6	E	474	486	Right-handed alpha
Helix 88	AJ7	E	503	507	Right-handed 310
Helix 89	AJ8	E	509	515	Right-handed alpha
Helix 90	AJ9	E	516	536	Right-handed alpha
Helix 91	AK1	E	554	561	Right-handed 310
Helix 92	AK2	E	580	594	Right-handed alpha
Helix 93	AK3	G	56	67	Right-handed alpha
Helix 94	AK4	G	103	107	Right-handed 310
Helix 95	AK5	G	122	127	Right-handed alpha
Helix 96	AK6	G	131	135	Right-handed 310
Helix 97	AK7	G	138	147	Right-handed alpha
Helix 98	AK8	G	147	152	Right-handed alpha
Helix 99	AK9	G	162	177	Right-handed alpha
Helix 100	AL1	G	187	192	Right-handed alpha
Helix 101	AL2	G	200	217	Right-handed alpha
Helix 102	AL3	G	231	239	Right-handed alpha
Helix 103	AL4	G	240	243	Right-handed 310
Helix 104	AL5	G	246	264	Right-handed alpha
Helix 105	AL6	G	275	282	Right-handed alpha
Helix 106	AL7	G	283	285	Right-handed 310
Helix 107	AL8	G	287	291	Right-handed 310
Helix 108	AL9	G	299	326	Right-handed alpha
Helix 109	AM1	G	350	365	Right-handed alpha
Helix 110	AM2	G	365	374	Right-handed alpha
Helix 111	AM3	G	379	387	Right-handed alpha
Helix 112	AM4	G	388	390	Right-handed 310
Helix 113	AM5	G	394	402	Right-handed alpha
Helix 114	AM6	G	424	430	Right-handed alpha
Helix 115	AM7	G	444	449	Right-handed alpha
Helix 116	AM8	G	462	466	Right-handed 310
Helix 117	AM9	G	471	473	Right-handed 310
Helix 118	AN1	G	474	486	Right-handed alpha
Helix 119	AN2	G	503	507	Right-handed 310
Helix 120	AN3	G	509	515	Right-handed alpha
Helix 121	AN4	G	516	538	Right-handed alpha
Helix 122	AN5	G	554	561	Right-handed 310
Helix 123	AN6	G	580	594	Right-handed alpha

There are 14 sheets in PDB entry 6M4F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	181	185	parallel
Strand 3	A	220	226	parallel
Strand 4	A	269	274	parallel
Strand 5	A	333	339	parallel
Strand 6	A	407	411	parallel
Strand 7	A	492	494	parallel
Strand 8	A	541	547	parallel
Strand 9	A	116	120	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	345	first strand
Strand 2	A	417	418	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	469	470	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	568	first strand
Strand 2	A	577	579	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	181	185	parallel
Strand 3	C	220	226	parallel
Strand 4	C	269	274	parallel
Strand 5	C	333	339	parallel
Strand 6	C	408	411	parallel
Strand 7	C	492	494	parallel
Strand 8	C	541	547	parallel
Strand 9	C	116	120	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	345	first strand
Strand 2	C	417	418	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	566	568	first strand
Strand 2	C	577	579	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	120	first strand
Strand 2	E	181	185	parallel
Strand 3	E	220	226	parallel
Strand 4	E	269	274	parallel
Strand 5	E	333	339	parallel
Strand 6	E	407	411	parallel
Strand 7	E	492	494	parallel
Strand 8	E	541	547	parallel
Strand 9	E	116	120	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	344	345	first strand
Strand 2	E	417	418	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	459	460	first strand
Strand 2	E	469	470	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	566	568	first strand
Strand 2	E	577	579	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	120	first strand
Strand 2	G	181	185	parallel
Strand 3	G	220	226	parallel
Strand 4	G	269	274	parallel
Strand 5	G	333	339	parallel
Strand 6	G	408	411	parallel
Strand 7	G	492	494	parallel
Strand 8	G	541	547	parallel
Strand 9	G	116	120	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	344	345	first strand
Strand 2	G	417	418	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	566	568	first strand
Strand 2	G	577	579	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M4F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M4F