Analysis of interatomic Contacts of Structural Units in PDB entry:
6M4L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M4L entry

There is 1 chain in PDB entry 6M4L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 17LEU 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6M4L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 53Right-handed alpha
Helix 2
AA2
A
75 81Right-handed 310
Helix 3
AA3
A
93 107Right-handed alpha
Helix 4
AA4
A
147 151Right-handed 310
Helix 5
AA5
A
169 176Right-handed alpha
Helix 6
AA6
A
188 206Right-handed alpha
Helix 7
AA7
A
214 218Right-handed 310
Helix 8
AA8
A
219 228Right-handed alpha
Helix 9
AA9
A
259 263Right-handed 310
Helix 10
AB1
A
271 284Right-handed alpha
Helix 11
AB2
A
285 288Right-handed 310
Helix 12
AB3
A
289 296Right-handed 310
Helix 13
AB4
A
297 301Right-handed 310
Helix 14
AB5
A
304 306Right-handed 310
Helix 15
AB6
A
316 320Right-handed 310
Helix 16
AB7
A
331 333Right-handed 310
Helix 17
AB8
A
334 348Right-handed alpha
Helix 18
AB9
A
397 400Right-handed 310
Helix 19
AC1
A
401 414Right-handed alpha
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There are 6 sheets in PDB entry 6M4L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
57 60parallel
Strand 3
A
110 115parallel
Strand 4
A
209 212parallel
Strand 5
A
245 248parallel
Strand 6
A
268 270parallel
Strand 7
A
308 310parallel
Strand 8
A
352 357parallel
Strand 9
A
32 35parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
133 135anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
369 370anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 424first strand
Strand 2
A
429 434anti-parallel
Strand 3
A
438 443anti-parallel
Strand 4
A
505 509anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 454first strand
Strand 2
A
493 498anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 462first strand
Strand 2
A
486 488anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il