Analysis of interatomic Contacts of Structural Units in PDB entry:
6M4N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M4N entry

There are 8 chains in PDB entry 6M4N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 18	LEU 472
B	ILE 45	HIS 542
C	PRO 12	ILE 150
D	ALA 7	PHE 55
E	TYR 18	LEU 472
F	ILE 45	HIS 542
G	PRO 12	ILE 150
H	ALA 7	PHE 55

There are 84 helices in PDB entry 6M4N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	40	Right-handed alpha
Helix 2	AA2	A	54	62	Right-handed alpha
Helix 3	AA3	A	110	113	Right-handed 310
Helix 4	AA4	A	114	129	Right-handed alpha
Helix 5	AA5	A	142	157	Right-handed alpha
Helix 6	AA6	A	174	178	Right-handed 310
Helix 7	AA7	A	194	202	Right-handed alpha
Helix 8	AA8	A	216	229	Right-handed alpha
Helix 9	AA9	A	233	237	Right-handed 310
Helix 10	AB1	A	257	268	Right-handed alpha
Helix 11	AB2	A	288	294	Right-handed alpha
Helix 12	AB3	A	296	300	Right-handed 310
Helix 13	AB4	A	327	332	Right-handed alpha
Helix 14	AB5	A	342	359	Right-handed alpha
Helix 15	AB6	A	361	374	Right-handed alpha
Helix 16	AB7	A	404	422	Right-handed alpha
Helix 17	AB8	A	453	472	Right-handed alpha
Helix 18	AB9	B	67	92	Right-handed alpha
Helix 19	AC1	B	120	126	Right-handed alpha
Helix 20	AC2	B	185	199	Right-handed alpha
Helix 21	AC3	B	213	228	Right-handed alpha
Helix 22	AC4	B	237	246	Right-handed alpha
Helix 23	AC5	B	247	249	Right-handed 310
Helix 24	AC6	B	263	273	Right-handed alpha
Helix 25	AC7	B	284	298	Right-handed alpha
Helix 26	AC8	B	326	338	Right-handed alpha
Helix 27	AC9	B	357	363	Right-handed alpha
Helix 28	AD1	B	391	399	Right-handed alpha
Helix 29	AD2	B	412	428	Right-handed alpha
Helix 30	AD3	B	436	456	Right-handed alpha
Helix 31	AD4	B	475	489	Right-handed alpha
Helix 32	AD5	B	517	535	Right-handed alpha
Helix 33	AD6	C	21	39	Right-handed alpha
Helix 34	AD7	C	44	63	Right-handed alpha
Helix 35	AD8	C	78	83	Right-handed 310
Helix 36	AD9	C	88	93	Right-handed 310
Helix 37	AE1	C	98	116	Right-handed alpha
Helix 38	AE2	C	117	120	Right-handed 310
Helix 39	AE3	C	121	136	Right-handed alpha
Helix 40	AE4	D	8	23	Right-handed alpha
Helix 41	AE5	D	24	26	Right-handed 310
Helix 42	AE6	D	30	53	Right-handed alpha
Helix 43	AE7	E	23	40	Right-handed alpha
Helix 44	AE8	E	54	62	Right-handed alpha
Helix 45	AE9	E	110	113	Right-handed 310
Helix 46	AF1	E	114	129	Right-handed alpha
Helix 47	AF2	E	142	157	Right-handed alpha
Helix 48	AF3	E	174	178	Right-handed 310
Helix 49	AF4	E	194	202	Right-handed alpha
Helix 50	AF5	E	216	229	Right-handed alpha
Helix 51	AF6	E	233	237	Right-handed 310
Helix 52	AF7	E	257	268	Right-handed alpha
Helix 53	AF8	E	288	294	Right-handed alpha
Helix 54	AF9	E	296	300	Right-handed 310
Helix 55	AG1	E	327	332	Right-handed alpha
Helix 56	AG2	E	342	359	Right-handed alpha
Helix 57	AG3	E	361	374	Right-handed alpha
Helix 58	AG4	E	404	422	Right-handed alpha
Helix 59	AG5	E	453	472	Right-handed alpha
Helix 60	AG6	F	67	92	Right-handed alpha
Helix 61	AG7	F	120	126	Right-handed alpha
Helix 62	AG8	F	185	199	Right-handed alpha
Helix 63	AG9	F	213	228	Right-handed alpha
Helix 64	AH1	F	237	246	Right-handed alpha
Helix 65	AH2	F	247	249	Right-handed 310
Helix 66	AH3	F	263	273	Right-handed alpha
Helix 67	AH4	F	284	298	Right-handed alpha
Helix 68	AH5	F	326	338	Right-handed alpha
Helix 69	AH6	F	357	363	Right-handed alpha
Helix 70	AH7	F	391	399	Right-handed alpha
Helix 71	AH8	F	412	428	Right-handed alpha
Helix 72	AH9	F	436	456	Right-handed alpha
Helix 73	AI1	F	475	489	Right-handed alpha
Helix 74	AI2	F	517	535	Right-handed alpha
Helix 75	AI3	G	21	39	Right-handed alpha
Helix 76	AI4	G	44	63	Right-handed alpha
Helix 77	AI5	G	78	83	Right-handed 310
Helix 78	AI6	G	88	93	Right-handed 310
Helix 79	AI7	G	98	116	Right-handed alpha
Helix 80	AI8	G	117	120	Right-handed 310
Helix 81	AI9	G	121	136	Right-handed alpha
Helix 82	AJ1	H	8	23	Right-handed alpha
Helix 83	AJ2	H	24	26	Right-handed 310
Helix 84	AJ3	H	30	53	Right-handed alpha

There are 14 sheets in PDB entry 6M4N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	95	first strand
Strand 2	A	98	102	anti-parallel
Strand 3	A	424	425	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	164	first strand
Strand 2	A	316	320	anti-parallel
Strand 3	A	302	304	anti-parallel
Strand 4	A	271	273	parallel
Strand 5	A	241	244	parallel
Strand 6	A	185	187	parallel
Strand 7	A	206	208	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	395	first strand
Strand 2	A	445	447	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	152	first strand
Strand 2	B	161	172	anti-parallel
Strand 3	B	491	492	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	235	first strand
Strand 2	B	386	390	anti-parallel
Strand 3	B	372	376	anti-parallel
Strand 4	B	342	345	parallel
Strand 5	B	310	315	parallel
Strand 6	B	255	258	parallel
Strand 7	B	276	279	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	318	first strand
Strand 2	B	323	324	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	471	first strand
Strand 2	B	508	511	anti-parallel
Strand 3	B	494	495	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	95	first strand
Strand 2	E	98	102	anti-parallel
Strand 3	E	424	425	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	164	first strand
Strand 2	E	316	320	anti-parallel
Strand 3	E	302	304	anti-parallel
Strand 4	E	271	273	parallel
Strand 5	E	241	244	parallel
Strand 6	E	185	187	parallel
Strand 7	E	206	208	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	393	395	first strand
Strand 2	E	445	447	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	152	first strand
Strand 2	F	161	172	anti-parallel
Strand 3	F	491	492	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	231	235	first strand
Strand 2	F	386	390	anti-parallel
Strand 3	F	372	376	anti-parallel
Strand 4	F	342	345	parallel
Strand 5	F	310	315	parallel
Strand 6	F	255	258	parallel
Strand 7	F	276	279	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	317	318	first strand
Strand 2	F	323	324	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	468	471	first strand
Strand 2	F	508	511	anti-parallel
Strand 3	F	494	495	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M4N

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M4N