Analysis of interatomic Contacts of Structural Units in PDB entry:
6M4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M4P entry

There are 2 chains in PDB entry 6M4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8TRP 401
B
 PRO 8TRP 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6M4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 34Right-handed alpha
Helix 2
AA2
A
52 62Right-handed alpha
Helix 3
AA3
A
96 107Right-handed alpha
Helix 4
AA4
A
110 116Right-handed alpha
Helix 5
AA5
A
117 136Right-handed alpha
Helix 6
AA6
A
141 145Right-handed alpha
Helix 7
AA7
A
147 159Right-handed alpha
Helix 8
AA8
A
161 169Right-handed 310
Helix 9
AA9
A
192 210Right-handed alpha
Helix 10
AB1
A
214 221Right-handed alpha
Helix 11
AB2
A
225 257Right-handed alpha
Helix 12
AB3
A
258 268Right-handed alpha
Helix 13
AB4
A
271 284Right-handed alpha
Helix 14
AB5
A
314 318Right-handed alpha
Helix 15
AB6
A
344 348Right-handed 310
Helix 16
AB7
A
349 350Right-handed 310
Helix 17
AB8
A
351 370Right-handed alpha
Helix 18
AB9
A
378 382Right-handed 310
Helix 19
AC1
B
24 34Right-handed alpha
Helix 20
AC2
B
52 62Right-handed alpha
Helix 21
AC3
B
96 106Right-handed alpha
Helix 22
AC4
B
107 109Right-handed 310
Helix 23
AC5
B
110 115Right-handed alpha
Helix 24
AC6
B
117 136Right-handed alpha
Helix 25
AC7
B
141 145Right-handed alpha
Helix 26
AC8
B
147 159Right-handed alpha
Helix 27
AC9
B
161 169Right-handed 310
Helix 28
AD1
B
192 210Right-handed alpha
Helix 29
AD2
B
214 220Right-handed alpha
Helix 30
AD3
B
225 240Right-handed alpha
Helix 31
AD4
B
241 257Right-handed alpha
Helix 32
AD5
B
258 268Right-handed alpha
Helix 33
AD6
B
271 284Right-handed alpha
Helix 34
AD7
B
314 318Right-handed alpha
Helix 35
AD8
B
331 335Right-handed 310
Helix 36
AD9
B
344 348Right-handed 310
Helix 37
AE1
B
349 350Right-handed 310
Helix 38
AE2
B
351 370Right-handed alpha
Helix 39
AE3
B
378 382Right-handed 310
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There are 6 sheets in PDB entry 6M4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
46 50anti-parallel
Strand 3
A
309 313parallel
Strand 4
A
288 293anti-parallel
Strand 5
A
65 66anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
398 400anti-parallel
Strand 3
A
374 375anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
302 304anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 40first strand
Strand 2
B
46 50anti-parallel
Strand 3
B
309 313parallel
Strand 4
B
288 293anti-parallel
Strand 5
B
65 66anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
398 400anti-parallel
Strand 3
B
374 375anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 299first strand
Strand 2
B
302 304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il