Analysis of interatomic Contacts of Structural Units in PDB entry:
6M4Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M4Q entry

There is 1 chain in PDB entry 6M4Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8TRP 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6M4Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 34Right-handed alpha
Helix 2
AA2
A
52 62Right-handed alpha
Helix 3
AA3
A
89 93Right-handed 310
Helix 4
AA4
A
96 106Right-handed alpha
Helix 5
AA5
A
107 109Right-handed 310
Helix 6
AA6
A
110 116Right-handed alpha
Helix 7
AA7
A
117 136Right-handed alpha
Helix 8
AA8
A
141 145Right-handed alpha
Helix 9
AA9
A
147 159Right-handed alpha
Helix 10
AB1
A
161 169Right-handed 310
Helix 11
AB2
A
192 210Right-handed alpha
Helix 12
AB3
A
214 220Right-handed alpha
Helix 13
AB4
A
225 240Right-handed alpha
Helix 14
AB5
A
241 257Right-handed alpha
Helix 15
AB6
A
258 268Right-handed alpha
Helix 16
AB7
A
271 284Right-handed alpha
Helix 17
AB8
A
314 319Right-handed alpha
Helix 18
AB9
A
331 335Right-handed 310
Helix 19
AC1
A
344 348Right-handed 310
Helix 20
AC2
A
351 370Right-handed alpha
Helix 21
AC3
A
378 382Right-handed 310
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There are 3 sheets in PDB entry 6M4Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
46 50anti-parallel
Strand 3
A
309 313parallel
Strand 4
A
288 293anti-parallel
Strand 5
A
65 66anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
398 400anti-parallel
Strand 3
A
374 375anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
302 304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il