Analysis of interatomic Contacts of Structural Units in PDB entry:
6M4V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M4V entry

There are 4 chains in PDB entry 6M4V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU -367	GLU 32
B	GLY 34	GLU 108
C	GLU -367	GLU 32
D	GLY 34	GLU 108

There are 38 helices in PDB entry 6M4V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-357	-355	Right-handed 310
Helix 2	AA2	A	-354	-338	Right-handed alpha
Helix 3	AA3	A	-328	-318	Right-handed alpha
Helix 4	AA4	A	-306	-298	Right-handed alpha
Helix 5	AA5	A	-280	-273	Right-handed alpha
Helix 6	AA6	A	-240	-227	Right-handed alpha
Helix 7	AA7	A	-213	-208	Right-handed alpha
Helix 8	AA8	A	-207	-205	Right-handed 310
Helix 9	AA9	A	-185	-169	Right-handed alpha
Helix 10	AB1	A	-161	-150	Right-handed alpha
Helix 11	AB2	A	-139	-132	Right-handed alpha
Helix 12	AB3	A	-98	-87	Right-handed alpha
Helix 13	AB4	A	-84	-73	Right-handed alpha
Helix 14	AB5	A	-66	-58	Right-handed alpha
Helix 15	AB6	A	-56	-43	Right-handed alpha
Helix 16	AB7	A	-35	-18	Right-handed alpha
Helix 17	AB8	A	-14	0	Right-handed alpha
Helix 18	AB9	B	40	44	Right-handed alpha
Helix 19	AC1	B	57	65	Right-handed alpha
Helix 20	AC2	B	79	82	Right-handed 310
Helix 21	AC3	C	-354	-338	Right-handed alpha
Helix 22	AC4	C	-328	-317	Right-handed alpha
Helix 23	AC5	C	-306	-298	Right-handed alpha
Helix 24	AC6	C	-280	-273	Right-handed alpha
Helix 25	AC7	C	-240	-229	Right-handed alpha
Helix 26	AC8	C	-217	-208	Right-handed alpha
Helix 27	AC9	C	-185	-169	Right-handed alpha
Helix 28	AD1	C	-161	-151	Right-handed alpha
Helix 29	AD2	C	-142	-140	Right-handed 310
Helix 30	AD3	C	-139	-132	Right-handed alpha
Helix 31	AD4	C	-98	-87	Right-handed alpha
Helix 32	AD5	C	-84	-73	Right-handed alpha
Helix 33	AD6	C	-66	-58	Right-handed alpha
Helix 34	AD7	C	-56	-43	Right-handed alpha
Helix 35	AD8	C	-35	-17	Right-handed alpha
Helix 36	AD9	C	-14	0	Right-handed alpha
Helix 37	AE1	D	40	44	Right-handed alpha
Helix 38	AE2	D	57	65	Right-handed alpha

There are 14 sheets in PDB entry 6M4V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-335	-332	first strand
Strand 2	A	-363	-359	parallel
Strand 3	A	-311	-307	parallel
Strand 4	A	-112	-104	anti-parallel
Strand 5	A	-265	-259	anti-parallel
Strand 6	A	-69	-68	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-335	-332	first strand
Strand 2	A	-363	-359	parallel
Strand 3	A	-311	-307	parallel
Strand 4	A	-112	-104	anti-parallel
Strand 5	A	-42	-41	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-272	-271	first strand
Strand 2	A	-268	-267	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-146	-143	first strand
Strand 2	A	-256	-252	anti-parallel
Strand 3	A	-128	-125	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-203	-198	first strand
Strand 2	A	-195	-188	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	9	first strand
Strand 2	B	72	77	anti-parallel
Strand 3	B	98	108	anti-parallel
Strand 4	A	22	31	anti-parallel
Strand 5	B	36	39	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	9	first strand
Strand 2	B	72	77	anti-parallel
Strand 3	B	98	108	anti-parallel
Strand 4	A	22	31	anti-parallel
Strand 5	B	47	50	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	-335	-332	first strand
Strand 2	C	-363	-360	parallel
Strand 3	C	-311	-307	parallel
Strand 4	C	-112	-104	anti-parallel
Strand 5	C	-265	-259	anti-parallel
Strand 6	C	-69	-68	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	-335	-332	first strand
Strand 2	C	-363	-360	parallel
Strand 3	C	-311	-307	parallel
Strand 4	C	-112	-104	anti-parallel
Strand 5	C	-42	-41	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	-272	-271	first strand
Strand 2	C	-268	-267	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	-225	-223	first strand
Strand 2	C	-148	-143	parallel
Strand 3	C	-256	-252	anti-parallel
Strand 4	C	-128	-125	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	-203	-199	first strand
Strand 2	C	-194	-188	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	9	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	98	108	anti-parallel
Strand 4	C	22	31	anti-parallel
Strand 5	D	35	39	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	9	first strand
Strand 2	D	72	77	anti-parallel
Strand 3	D	98	108	anti-parallel
Strand 4	C	22	31	anti-parallel
Strand 5	D	47	50	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M4V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M4V