Analysis of interatomic Contacts of Structural Units in PDB entry:
6M5A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M5A entry

There is 1 chain in PDB entry 6M5A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 38GLU 896
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 6M5A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 43Right-handed 310
Helix 2
AA2
A
56 60Right-handed 310
Helix 3
AA3
A
69 81Right-handed alpha
Helix 4
AA4
A
91 97Right-handed alpha
Helix 5
AA5
A
252 255Right-handed 310
Helix 6
AA6
A
304 316Right-handed alpha
Helix 7
AA7
A
321 341Right-handed alpha
Helix 8
AA8
A
348 365Right-handed alpha
Helix 9
AA9
A
374 378Right-handed 310
Helix 10
AB1
A
392 404Right-handed alpha
Helix 11
AB2
A
409 422Right-handed alpha
Helix 12
AB3
A
450 463Right-handed alpha
Helix 13
AB4
A
465 485Right-handed alpha
Helix 14
AB5
A
486 489Right-handed 310
Helix 15
AB6
A
491 495Right-handed 310
Helix 16
AB7
A
507 511Right-handed 310
Helix 17
AB8
A
518 523Right-handed 310
Helix 18
AB9
A
533 555Right-handed alpha
Helix 19
AC1
A
556 578Right-handed alpha
Helix 20
AC2
A
601 604Right-handed 310
Helix 21
AC3
A
605 610Right-handed alpha
Helix 22
AC4
A
617 623Right-handed alpha
Helix 23
AC5
A
624 629Right-handed 310
Helix 24
AC6
A
642 649Right-handed alpha
Helix 25
AC7
A
658 676Right-handed alpha
Helix 26
AC8
A
685 701Right-handed alpha
Helix 27
AC9
A
702 705Right-handed 310
Helix 28
AD1
A
732 741Right-handed alpha
Helix 29
AD2
A
762 768Right-handed alpha
Helix 30
AD3
A
871 875Right-handed 310
Helix 31
AD4
A
882 888Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 6M5A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
174 183anti-parallel
Strand 3
A
186 192anti-parallel
Strand 4
A
198 206anti-parallel
Strand 5
A
211 220anti-parallel
Strand 6
A
291 298anti-parallel
Strand 7
A
261 265anti-parallel
Strand 8
A
245 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
114 116anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
149 151anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
169 170anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
224 231anti-parallel
Strand 4
A
278 285anti-parallel
Strand 5
A
273 275anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
257 258anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
792 800anti-parallel
Strand 3
A
803 810anti-parallel
Strand 4
A
821 826anti-parallel
Strand 5
A
829 834anti-parallel
Strand 6
A
859 861anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
380 381anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
431 432anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 506first strand
Strand 2
A
531 532anti-parallel
Strand 3
A
589 590anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 580first strand
Strand 2
A
585 586anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
715 716first strand
Strand 2
A
749 750anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
772 773first strand
Strand 2
A
780 782anti-parallel
Strand 3
A
840 843anti-parallel
Strand 4
A
848 851anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il