Analysis of interatomic Contacts of Structural Units in PDB entry:
6M5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M5D entry

There is 1 chain in PDB entry 6M5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ALA 582
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6M5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 32Right-handed alpha
Helix 2
AA2
A
35 56Right-handed alpha
Helix 3
AA3
A
65 76Right-handed alpha
Helix 4
AA4
A
96 101Right-handed alpha
Helix 5
AA5
A
121 130Right-handed alpha
Helix 6
AA6
A
130 146Right-handed alpha
Helix 7
AA7
A
150 169Right-handed alpha
Helix 8
AA8
A
173 223Right-handed alpha
Helix 9
AA9
A
227 246Right-handed alpha
Helix 10
AB1
A
249 267Right-handed alpha
Helix 11
AB2
A
282 290Right-handed alpha
Helix 12
AB3
A
305 310Right-handed alpha
Helix 13
AB4
A
314 322Right-handed alpha
Helix 14
AB5
A
322 337Right-handed alpha
Helix 15
AB6
A
342 359Right-handed alpha
Helix 16
AB7
A
365 370Right-handed alpha
Helix 17
AB8
A
376 399Right-handed alpha
Helix 18
AB9
A
401 415Right-handed alpha
Helix 19
AC1
A
419 438Right-handed alpha
Helix 20
AC2
A
444 467Right-handed alpha
Helix 21
AC3
A
470 480Right-handed alpha
Helix 22
AC4
A
483 490Right-handed alpha
Helix 23
AC5
A
503 507Right-handed 310
Helix 24
AC6
A
510 515Right-handed 310
Helix 25
AC7
A
517 536Right-handed alpha
Helix 26
AC8
A
540 560Right-handed alpha
Helix 27
AC9
A
565 574Right-handed alpha
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There are no sheets in PDB entry 6M5D
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il