Analysis of interatomic Contacts of Structural Units in PDB entry:
6M5G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M5G entry

There are 8 chains in PDB entry 6M5G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	CYS 374
B	THR 5	CYS 374
C	THR 5	CYS 374
D	THR 5	CYS 374
E	THR 5	CYS 374
F	PHE 18	GLN 135
G	PHE 18	GLN 135
H	PHE 18	GLN 135

There are111 helices in PDB entry 6M5G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	62	65	Right-handed 310
Helix 3	AA3	A	78	92	Right-handed alpha
Helix 4	AA4	A	97	101	Right-handed 310
Helix 5	AA5	A	112	126	Right-handed alpha
Helix 6	AA6	A	138	146	Right-handed alpha
Helix 7	AA7	A	171	175	Right-handed 310
Helix 8	AA8	A	181	193	Right-handed alpha
Helix 9	AA9	A	194	197	Right-handed 310
Helix 10	AB1	A	202	217	Right-handed alpha
Helix 11	AB2	A	222	230	Right-handed alpha
Helix 12	AB3	A	263	268	Right-handed 310
Helix 13	AB4	A	273	284	Right-handed alpha
Helix 14	AB5	A	286	294	Right-handed alpha
Helix 15	AB6	A	301	305	Right-handed 310
Helix 16	AB7	A	311	318	Right-handed alpha
Helix 17	AB8	A	334	336	Right-handed 310
Helix 18	AB9	A	337	349	Right-handed alpha
Helix 19	AC1	A	350	353	Right-handed 310
Helix 20	AC2	A	359	366	Right-handed alpha
Helix 21	AC3	A	369	374	Right-handed alpha
Helix 22	AC4	B	55	61	Right-handed alpha
Helix 23	AC5	B	78	92	Right-handed alpha
Helix 24	AC6	B	112	126	Right-handed alpha
Helix 25	AC7	B	139	146	Right-handed alpha
Helix 26	AC8	B	181	193	Right-handed alpha
Helix 27	AC9	B	202	217	Right-handed alpha
Helix 28	AD1	B	222	232	Right-handed alpha
Helix 29	AD2	B	257	262	Right-handed 310
Helix 30	AD3	B	263	268	Right-handed 310
Helix 31	AD4	B	273	284	Right-handed alpha
Helix 32	AD5	B	286	294	Right-handed alpha
Helix 33	AD6	B	301	305	Right-handed 310
Helix 34	AD7	B	311	318	Right-handed alpha
Helix 35	AD8	B	337	347	Right-handed alpha
Helix 36	AD9	B	348	353	Right-handed 310
Helix 37	AE1	B	359	366	Right-handed alpha
Helix 38	AE2	B	369	374	Right-handed alpha
Helix 39	AE3	C	55	61	Right-handed alpha
Helix 40	AE4	C	78	92	Right-handed alpha
Helix 41	AE5	C	112	126	Right-handed alpha
Helix 42	AE6	C	137	146	Right-handed alpha
Helix 43	AE7	C	171	175	Right-handed 310
Helix 44	AE8	C	181	193	Right-handed alpha
Helix 45	AE9	C	194	196	Right-handed 310
Helix 46	AF1	C	202	217	Right-handed alpha
Helix 47	AF2	C	222	232	Right-handed alpha
Helix 48	AF3	C	251	255	Right-handed 310
Helix 49	AF4	C	257	262	Right-handed 310
Helix 50	AF5	C	263	268	Right-handed 310
Helix 51	AF6	C	273	285	Right-handed alpha
Helix 52	AF7	C	286	294	Right-handed alpha
Helix 53	AF8	C	301	307	Right-handed 310
Helix 54	AF9	C	308	319	Right-handed alpha
Helix 55	AG1	C	337	348	Right-handed alpha
Helix 56	AG2	C	351	355	Right-handed 310
Helix 57	AG3	C	359	366	Right-handed alpha
Helix 58	AG4	C	369	374	Right-handed alpha
Helix 59	AG5	D	55	61	Right-handed alpha
Helix 60	AG6	D	78	92	Right-handed alpha
Helix 61	AG7	D	112	127	Right-handed alpha
Helix 62	AG8	D	137	146	Right-handed alpha
Helix 63	AG9	D	181	194	Right-handed alpha
Helix 64	AH1	D	202	217	Right-handed alpha
Helix 65	AH2	D	222	232	Right-handed alpha
Helix 66	AH3	D	258	263	Right-handed alpha
Helix 67	AH4	D	273	284	Right-handed alpha
Helix 68	AH5	D	286	294	Right-handed alpha
Helix 69	AH6	D	301	307	Right-handed 310
Helix 70	AH7	D	308	319	Right-handed alpha
Helix 71	AH8	D	334	336	Right-handed 310
Helix 72	AH9	D	337	348	Right-handed alpha
Helix 73	AI1	D	350	355	Right-handed 310
Helix 74	AI2	D	359	366	Right-handed alpha
Helix 75	AI3	D	368	374	Right-handed alpha
Helix 76	AI4	E	55	61	Right-handed alpha
Helix 77	AI5	E	78	92	Right-handed alpha
Helix 78	AI6	E	97	101	Right-handed 310
Helix 79	AI7	E	112	126	Right-handed alpha
Helix 80	AI8	E	137	146	Right-handed alpha
Helix 81	AI9	E	171	175	Right-handed 310
Helix 82	AJ1	E	181	193	Right-handed alpha
Helix 83	AJ2	E	194	196	Right-handed 310
Helix 84	AJ3	E	202	217	Right-handed alpha
Helix 85	AJ4	E	222	232	Right-handed alpha
Helix 86	AJ5	E	273	284	Right-handed alpha
Helix 87	AJ6	E	286	294	Right-handed alpha
Helix 88	AJ7	E	301	306	Right-handed 310
Helix 89	AJ8	E	308	319	Right-handed alpha
Helix 90	AJ9	E	337	348	Right-handed alpha
Helix 91	AK1	E	351	355	Right-handed 310
Helix 92	AK2	E	358	366	Right-handed alpha
Helix 93	AK3	E	369	374	Right-handed alpha
Helix 94	AK4	F	21	46	Right-handed alpha
Helix 95	AK5	F	63	75	Right-handed alpha
Helix 96	AK6	F	85	103	Right-handed alpha
Helix 97	AK7	F	111	117	Right-handed alpha
Helix 98	AK8	F	119	124	Right-handed alpha
Helix 99	AK9	F	125	135	Right-handed alpha
Helix 100	AL1	G	21	46	Right-handed alpha
Helix 101	AL2	G	63	75	Right-handed alpha
Helix 102	AL3	G	85	102	Right-handed alpha
Helix 103	AL4	G	111	117	Right-handed alpha
Helix 104	AL5	G	119	124	Right-handed alpha
Helix 105	AL6	G	124	135	Right-handed alpha
Helix 106	AL7	H	21	46	Right-handed alpha
Helix 107	AL8	H	63	75	Right-handed alpha
Helix 108	AL9	H	85	103	Right-handed alpha
Helix 109	AM1	H	112	117	Right-handed alpha
Helix 110	AM2	H	119	124	Right-handed alpha
Helix 111	AM3	H	125	135	Right-handed alpha

There are 34 sheets in PDB entry 6M5G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	53	54	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	C	169	170	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	165	anti-parallel
Strand 3	A	150	154	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	247	248	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	103	107	parallel
Strand 3	B	131	136	parallel
Strand 4	B	357	358	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	29	32	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	D	169	170	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	163	165	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	241	first strand
Strand 2	B	247	248	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	329	330	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	19	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	53	54	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	E	169	170	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	155	first strand
Strand 2	C	160	165	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	241	first strand
Strand 2	C	247	249	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	298	first strand
Strand 2	C	329	330	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	9	first strand
Strand 2	D	103	107	parallel
Strand 3	D	131	136	parallel
Strand 4	D	357	358	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	16	19	anti-parallel
Strand 3	D	29	32	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	D	53	54	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	154	first strand
Strand 2	D	160	165	anti-parallel
Strand 3	D	177	178	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	241	first strand
Strand 2	D	247	248	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	298	first strand
Strand 2	D	329	330	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	8	12	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	132	136	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	53	54	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	154	first strand
Strand 2	E	161	165	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	297	298	first strand
Strand 2	E	329	330	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M5G

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M5G