Analysis of interatomic Contacts of Structural Units in PDB entry:
6M5H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M5H entry

There is 1 chain in PDB entry 6M5H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1LEU 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6M5H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 24Right-handed alpha
Helix 2
AA2
A
64 80Right-handed alpha
Helix 3
AA3
A
88 93Right-handed alpha
Helix 4
AA4
A
94 97Right-handed 310
Helix 5
AA5
A
99 104Right-handed 310
Helix 6
AA6
A
105 111Right-handed alpha
Helix 7
AA7
A
126 136Right-handed alpha
Helix 8
AA8
A
150 165Right-handed alpha
Helix 9
AA9
A
168 176Right-handed alpha
Helix 10
AB1
A
176 181Right-handed alpha
Helix 11
AB2
A
191 198Right-handed 310
Helix 12
AB3
A
216 222Right-handed alpha
Helix 13
AB4
A
226 238Right-handed alpha
Helix 14
AB5
A
242 245Right-handed 310
Helix 15
AB6
A
246 256Right-handed alpha
Helix 16
AB7
A
280 288Right-handed alpha
Helix 17
AB8
A
329 332Right-handed 310
Helix 18
AB9
A
344 359Right-handed alpha
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There are 4 sheets in PDB entry 6M5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
37 47anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
333 339anti-parallel
Strand 5
A
321 328anti-parallel
Strand 6
A
310 318anti-parallel
Strand 7
A
273 276anti-parallel
Strand 8
A
266 268anti-parallel
Strand 9
A
259 263anti-parallel
Strand 10
A
298 304anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
224 225anti-parallel
Strand 3
A
186 187anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
295 296anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
208 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il