Analysis of interatomic Contacts of Structural Units in PDB entry:
6M5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M5R entry

There are 3 chains in PDB entry 6M5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 35THR 727
B
 ALA 2ARG 775
C
 THR 12ARG 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 6M5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 42Right-handed 310
Helix 2
AA2
A
67 71Right-handed 310
Helix 3
AA3
A
73 78Right-handed alpha
Helix 4
AA4
A
81 89Right-handed alpha
Helix 5
AA5
A
90 94Right-handed 310
Helix 6
AA6
A
110 119Right-handed alpha
Helix 7
AA7
A
126 141Right-handed alpha
Helix 8
AA8
A
141 146Right-handed alpha
Helix 9
AA9
A
150 169Right-handed alpha
Helix 10
AB1
A
202 221Right-handed alpha
Helix 11
AB2
A
228 236Right-handed alpha
Helix 12
AB3
A
242 248Right-handed alpha
Helix 13
AB4
A
249 251Right-handed 310
Helix 14
AB5
A
263 277Right-handed alpha
Helix 15
AB6
A
290 292Right-handed 310
Helix 16
AB7
A
293 308Right-handed alpha
Helix 17
AB8
A
310 312Right-handed 310
Helix 18
AB9
A
336 340Right-handed 310
Helix 19
AC1
A
365 374Right-handed alpha
Helix 20
AC2
A
393 398Right-handed alpha
Helix 21
AC3
A
399 401Right-handed 310
Helix 22
AC4
A
418 424Right-handed 310
Helix 23
AC5
A
445 453Right-handed alpha
Helix 24
AC6
A
454 458Right-handed 310
Helix 25
AC7
A
479 489Right-handed alpha
Helix 26
AC8
A
496 500Right-handed 310
Helix 27
AC9
A
549 569Right-handed alpha
Helix 28
AD1
A
585 601Right-handed alpha
Helix 29
AD2
A
639 653Right-handed alpha
Helix 30
AD3
A
672 682Right-handed alpha
Helix 31
AD4
A
706 721Right-handed alpha
Helix 32
AD5
B
6 33Right-handed alpha
Helix 33
AD6
B
36 41Right-handed alpha
Helix 34
AD7
B
43 58Right-handed alpha
Helix 35
AD8
B
60 70Right-handed alpha
Helix 36
AD9
B
74 101Right-handed alpha
Helix 37
AE1
B
143 156Right-handed alpha
Helix 38
AE2
B
169 180Right-handed alpha
Helix 39
AE3
B
199 207Right-handed alpha
Helix 40
AE4
B
213 218Right-handed alpha
Helix 41
AE5
B
237 242Right-handed alpha
Helix 42
AE6
B
252 267Right-handed alpha
Helix 43
AE7
B
307 314Right-handed 310
Helix 44
AE8
B
324 355Right-handed alpha
Helix 45
AE9
B
361 366Right-handed alpha
Helix 46
AF1
B
367 371Right-handed 310
Helix 47
AF2
B
376 381Right-handed alpha
Helix 48
AF3
B
387 400Right-handed alpha
Helix 49
AF4
B
409 414Right-handed alpha
Helix 50
AF5
B
414 432Right-handed alpha
Helix 51
AF6
B
484 507Right-handed alpha
Helix 52
AF7
B
511 531Right-handed alpha
Helix 53
AF8
B
538 560Right-handed alpha
Helix 54
AF9
B
574 587Right-handed alpha
Helix 55
AG1
B
592 594Right-handed 310
Helix 56
AG2
B
595 608Right-handed alpha
Helix 57
AG3
B
622 634Right-handed alpha
Helix 58
AG4
B
637 640Right-handed 310
Helix 59
AG5
B
641 646Right-handed alpha
Helix 60
AG6
B
676 700Right-handed alpha
Helix 61
AG7
B
760 773Right-handed alpha
Helix 62
AG8
C
16 21Right-handed alpha
Helix 63
AG9
C
26 35Right-handed alpha
Helix 64
AH1
C
52 57Right-handed alpha
Helix 65
AH2
C
61 81Right-handed alpha
Helix 66
AH3
C
101 128Right-handed alpha
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There are 5 sheets in PDB entry 6M5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
65 66anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
407 409parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
322 326anti-parallel
Strand 3
A
330 333anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 619first strand
Strand 2
A
575 580parallel
Strand 3
A
503 509parallel
Strand 4
A
520 529anti-parallel
Strand 5
A
532 542anti-parallel
Strand 6
A
656 663parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
707 708first strand
Strand 2
B
726 728parallel
Strand 3
B
737 742anti-parallel
Strand 4
B
754 758anti-parallel
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