Analysis of interatomic Contacts of Structural Units in PDB entry:
6M5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M5U entry

There are 3 chains in PDB entry 6M5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 38THR 727
B
 ALA 2LEU 772
C
 LEU 13ARG 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6M5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 72Right-handed 310
Helix 2
AA2
A
73 81Right-handed alpha
Helix 3
AA3
A
81 89Right-handed alpha
Helix 4
AA4
A
112 118Right-handed alpha
Helix 5
AA5
A
129 149Right-handed alpha
Helix 6
AA6
A
150 167Right-handed alpha
Helix 7
AA7
A
168 170Right-handed 310
Helix 8
AA8
A
203 221Right-handed alpha
Helix 9
AA9
A
224 236Right-handed alpha
Helix 10
AB1
A
242 250Right-handed alpha
Helix 11
AB2
A
264 278Right-handed alpha
Helix 12
AB3
A
295 309Right-handed alpha
Helix 13
AB4
A
365 373Right-handed alpha
Helix 14
AB5
A
479 489Right-handed alpha
Helix 15
AB6
A
496 500Right-handed 310
Helix 16
AB7
A
549 569Right-handed alpha
Helix 17
AB8
A
585 601Right-handed alpha
Helix 18
AB9
A
639 653Right-handed alpha
Helix 19
AC1
A
672 682Right-handed alpha
Helix 20
AC2
A
706 719Right-handed alpha
Helix 21
AC3
B
6 33Right-handed alpha
Helix 22
AC4
B
36 41Right-handed alpha
Helix 23
AC5
B
43 58Right-handed alpha
Helix 24
AC6
B
61 70Right-handed alpha
Helix 25
AC7
B
74 101Right-handed alpha
Helix 26
AC8
B
106 115Right-handed alpha
Helix 27
AC9
B
142 156Right-handed alpha
Helix 28
AD1
B
161 180Right-handed alpha
Helix 29
AD2
B
187 191Right-handed 310
Helix 30
AD3
B
197 205Right-handed alpha
Helix 31
AD4
B
213 217Right-handed 310
Helix 32
AD5
B
237 243Right-handed alpha
Helix 33
AD6
B
250 265Right-handed alpha
Helix 34
AD7
B
307 312Right-handed 310
Helix 35
AD8
B
324 355Right-handed alpha
Helix 36
AD9
B
374 381Right-handed alpha
Helix 37
AE1
B
387 400Right-handed alpha
Helix 38
AE2
B
408 414Right-handed alpha
Helix 39
AE3
B
414 429Right-handed alpha
Helix 40
AE4
B
486 510Right-handed alpha
Helix 41
AE5
B
511 531Right-handed alpha
Helix 42
AE6
B
538 560Right-handed alpha
Helix 43
AE7
B
574 587Right-handed alpha
Helix 44
AE8
B
592 594Right-handed 310
Helix 45
AE9
B
595 608Right-handed alpha
Helix 46
AF1
B
622 633Right-handed alpha
Helix 47
AF2
B
637 646Right-handed alpha
Helix 48
AF3
B
675 700Right-handed alpha
Helix 49
AF4
B
760 772Right-handed alpha
Helix 50
AF5
C
26 35Right-handed alpha
Helix 51
AF6
C
61 80Right-handed alpha
Helix 52
AF7
C
101 128Right-handed alpha
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There are 7 sheets in PDB entry 6M5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
65 66anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 386first strand
Strand 2
A
254 259parallel
Strand 3
A
407 409parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
354 355parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
322 324anti-parallel
Strand 3
A
332 333anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 619first strand
Strand 2
A
575 580parallel
Strand 3
A
503 509parallel
Strand 4
A
520 529anti-parallel
Strand 5
A
532 542anti-parallel
Strand 6
A
656 663parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
139 140anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
566 568first strand
Strand 2
B
755 758parallel
Strand 3
B
737 740anti-parallel
Strand 4
B
726 728anti-parallel
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