Analysis of interatomic Contacts of Structural Units in PDB entry:
6M5X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M5X entry

There are 4 chains in PDB entry 6M5X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
O	VAL 2	GLY 335
R	VAL 2	GLY 335
P	VAL 2	ALA 334
Q	VAL 2	GLY 335

There are 63 helices in PDB entry 6M5X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	O	11	25	Right-handed alpha
Helix 2	AA2	O	38	48	Right-handed alpha
Helix 3	AA3	O	80	84	Right-handed 310
Helix 4	AA4	O	85	90	Right-handed 310
Helix 5	AA5	O	103	108	Right-handed alpha
Helix 6	AA6	O	109	114	Right-handed 310
Helix 7	AA7	O	135	139	Right-handed 310
Helix 8	AA8	O	149	167	Right-handed alpha
Helix 9	AA9	O	194	198	Right-handed 310
Helix 10	AB1	O	199	203	Right-handed 310
Helix 11	AB2	O	214	219	Right-handed alpha
Helix 12	AB3	O	220	223	Right-handed 310
Helix 13	AB4	O	252	265	Right-handed alpha
Helix 14	AB5	O	280	285	Right-handed 310
Helix 15	AB6	O	296	298	Right-handed 310
Helix 16	AB7	O	315	335	Right-handed alpha
Helix 17	AB8	R	11	25	Right-handed alpha
Helix 18	AB9	R	38	48	Right-handed alpha
Helix 19	AC1	R	80	84	Right-handed 310
Helix 20	AC2	R	85	90	Right-handed 310
Helix 21	AC3	R	103	108	Right-handed alpha
Helix 22	AC4	R	109	112	Right-handed 310
Helix 23	AC5	R	135	139	Right-handed 310
Helix 24	AC6	R	149	167	Right-handed alpha
Helix 25	AC7	R	194	198	Right-handed 310
Helix 26	AC8	R	199	203	Right-handed 310
Helix 27	AC9	R	214	219	Right-handed alpha
Helix 28	AD1	R	220	223	Right-handed 310
Helix 29	AD2	R	252	266	Right-handed alpha
Helix 30	AD3	R	280	285	Right-handed 310
Helix 31	AD4	R	296	298	Right-handed 310
Helix 32	AD5	R	315	334	Right-handed alpha
Helix 33	AD6	P	11	25	Right-handed alpha
Helix 34	AD7	P	38	48	Right-handed alpha
Helix 35	AD8	P	80	84	Right-handed 310
Helix 36	AD9	P	85	90	Right-handed 310
Helix 37	AE1	P	103	108	Right-handed alpha
Helix 38	AE2	P	109	112	Right-handed 310
Helix 39	AE3	P	135	139	Right-handed 310
Helix 40	AE4	P	149	167	Right-handed alpha
Helix 41	AE5	P	194	198	Right-handed 310
Helix 42	AE6	P	210	219	Right-handed alpha
Helix 43	AE7	P	220	223	Right-handed 310
Helix 44	AE8	P	252	266	Right-handed alpha
Helix 45	AE9	P	280	285	Right-handed 310
Helix 46	AF1	P	296	298	Right-handed 310
Helix 47	AF2	P	315	334	Right-handed alpha
Helix 48	AF3	Q	11	25	Right-handed alpha
Helix 49	AF4	Q	38	48	Right-handed alpha
Helix 50	AF5	Q	80	84	Right-handed 310
Helix 51	AF6	Q	85	90	Right-handed 310
Helix 52	AF7	Q	103	108	Right-handed alpha
Helix 53	AF8	Q	109	112	Right-handed 310
Helix 54	AF9	Q	135	139	Right-handed 310
Helix 55	AG1	Q	149	167	Right-handed alpha
Helix 56	AG2	Q	194	198	Right-handed 310
Helix 57	AG3	Q	199	203	Right-handed 310
Helix 58	AG4	Q	210	219	Right-handed alpha
Helix 59	AG5	Q	220	223	Right-handed 310
Helix 60	AG6	Q	252	266	Right-handed alpha
Helix 61	AG7	Q	280	285	Right-handed 310
Helix 62	AG8	Q	296	298	Right-handed 310
Helix 63	AG9	Q	315	335	Right-handed alpha

There are 12 sheets in PDB entry 6M5X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	59	62	first strand
Strand 2	O	65	68	anti-parallel
Strand 3	O	71	76	anti-parallel
Strand 4	O	28	33	parallel
Strand 5	O	4	8	parallel
Strand 6	O	93	96	parallel
Strand 7	O	117	120	parallel
Strand 8	O	144	146	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	205	208	first strand
Strand 2	O	226	233	anti-parallel
Strand 3	O	168	178	parallel
Strand 4	O	239	247	anti-parallel
Strand 5	O	305	312	anti-parallel
Strand 6	O	291	294	anti-parallel
Strand 7	O	272	275	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	205	208	first strand
Strand 2	O	226	233	anti-parallel
Strand 3	O	168	178	parallel
Strand 4	O	239	247	anti-parallel
Strand 5	O	305	312	anti-parallel
Strand 6	O	299	302	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	59	62	first strand
Strand 2	R	65	68	anti-parallel
Strand 3	R	71	76	anti-parallel
Strand 4	R	28	33	parallel
Strand 5	R	4	8	parallel
Strand 6	R	93	96	parallel
Strand 7	R	117	120	parallel
Strand 8	R	144	146	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	205	208	first strand
Strand 2	R	226	233	anti-parallel
Strand 3	R	168	178	parallel
Strand 4	R	239	247	anti-parallel
Strand 5	R	305	312	anti-parallel
Strand 6	R	291	294	anti-parallel
Strand 7	R	272	275	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	205	208	first strand
Strand 2	R	226	233	anti-parallel
Strand 3	R	168	178	parallel
Strand 4	R	239	247	anti-parallel
Strand 5	R	305	312	anti-parallel
Strand 6	R	299	302	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	59	62	first strand
Strand 2	P	65	68	anti-parallel
Strand 3	P	71	76	anti-parallel
Strand 4	P	28	33	parallel
Strand 5	P	4	8	parallel
Strand 6	P	93	96	parallel
Strand 7	P	117	120	parallel
Strand 8	P	144	146	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	205	208	first strand
Strand 2	P	226	233	anti-parallel
Strand 3	P	168	178	parallel
Strand 4	P	239	247	anti-parallel
Strand 5	P	305	312	anti-parallel
Strand 6	P	291	294	anti-parallel
Strand 7	P	272	275	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	205	208	first strand
Strand 2	P	226	233	anti-parallel
Strand 3	P	168	178	parallel
Strand 4	P	239	247	anti-parallel
Strand 5	P	305	312	anti-parallel
Strand 6	P	299	302	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	59	62	first strand
Strand 2	Q	65	68	anti-parallel
Strand 3	Q	71	76	anti-parallel
Strand 4	Q	28	33	parallel
Strand 5	Q	4	8	parallel
Strand 6	Q	93	96	parallel
Strand 7	Q	117	120	parallel
Strand 8	Q	144	146	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	205	208	first strand
Strand 2	Q	226	233	anti-parallel
Strand 3	Q	168	178	parallel
Strand 4	Q	239	247	anti-parallel
Strand 5	Q	305	312	anti-parallel
Strand 6	Q	291	294	anti-parallel
Strand 7	Q	272	275	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	205	208	first strand
Strand 2	Q	226	233	anti-parallel
Strand 3	Q	168	178	parallel
Strand 4	Q	239	247	anti-parallel
Strand 5	Q	305	312	anti-parallel
Strand 6	Q	299	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M5X

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M5X