Analysis of interatomic Contacts of Structural Units in PDB entry:
6M5Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M5Z entry

There are 2 chains in PDB entry 6M5Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 24THR 455
B
 THR 24THR 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6M5Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 53Right-handed alpha
Helix 2
AA2
A
55 68Right-handed alpha
Helix 3
AA3
A
111 122Right-handed alpha
Helix 4
AA4
A
135 139Right-handed 310
Helix 5
AA5
A
163 181Right-handed alpha
Helix 6
AA6
A
207 212Right-handed alpha
Helix 7
AA7
A
214 225Right-handed alpha
Helix 8
AA8
A
238 252Right-handed alpha
Helix 9
AA9
A
254 258Right-handed 310
Helix 10
AB1
A
304 319Right-handed alpha
Helix 11
AB2
A
350 361Right-handed alpha
Helix 12
AB3
B
44 47Right-handed 310
Helix 13
AB4
B
48 53Right-handed alpha
Helix 14
AB5
B
55 68Right-handed alpha
Helix 15
AB6
B
111 122Right-handed alpha
Helix 16
AB7
B
135 139Right-handed 310
Helix 17
AB8
B
163 180Right-handed alpha
Helix 18
AB9
B
207 212Right-handed alpha
Helix 19
AC1
B
214 225Right-handed alpha
Helix 20
AC2
B
238 252Right-handed alpha
Helix 21
AC3
B
254 258Right-handed 310
Helix 22
AC4
B
304 318Right-handed alpha
Helix 23
AC5
B
350 361Right-handed alpha
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There are 4 sheets in PDB entry 6M5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
414 420anti-parallel
Strand 3
A
447 454anti-parallel
Strand 4
A
391 397anti-parallel
Strand 5
A
379 385anti-parallel
Strand 6
A
368 373anti-parallel
Strand 7
A
24 35anti-parallel
Strand 8
A
403 408parallel
Strand 9
A
438 443anti-parallel
Strand 10
A
433 435anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 349first strand
Strand 2
A
338 343anti-parallel
Strand 3
A
323 332parallel
Strand 4
A
279 284parallel
Strand 5
A
260 264parallel
Strand 6
A
230 233parallel
Strand 7
A
187 189parallel
Strand 8
A
126 131parallel
Strand 9
A
77 82parallel
Strand 10
A
38 42parallel
Strand 11
A
323 332parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 430first strand
Strand 2
B
414 420anti-parallel
Strand 3
B
447 454anti-parallel
Strand 4
B
391 397anti-parallel
Strand 5
B
379 385anti-parallel
Strand 6
B
368 373anti-parallel
Strand 7
B
24 35anti-parallel
Strand 8
B
403 408parallel
Strand 9
B
438 443anti-parallel
Strand 10
B
433 435anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 349first strand
Strand 2
B
338 343anti-parallel
Strand 3
B
323 332parallel
Strand 4
B
279 284parallel
Strand 5
B
260 264parallel
Strand 6
B
230 233parallel
Strand 7
B
187 189parallel
Strand 8
B
126 131parallel
Strand 9
B
77 82parallel
Strand 10
B
38 42parallel
Strand 11
B
323 332parallel
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