Analysis of interatomic Contacts of Structural Units in PDB entry:
6M63


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M63 entry

There are 4 chains in PDB entry 6M63 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 10LEU 237
A
 VAL 241ARG 383
B
 ARG 8LEU 237
B
 VAL 241ARG 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6M63. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 19Right-handed alpha
Helix 2
AA2
A
20 27Right-handed 310
Helix 3
AA3
A
29 40Right-handed alpha
Helix 4
AA4
A
84 87Right-handed 310
Helix 5
AA5
A
175 182Right-handed 310
Helix 6
AA6
A
210 212Right-handed 310
Helix 7
AA7
A
229 234Right-handed 310
Helix 8
AA8
A
241 245Right-handed 310
Helix 9
AA9
A
248 254Right-handed 310
Helix 10
AB1
A
255 260Right-handed alpha
Helix 11
AB2
A
331 338Right-handed alpha
Helix 12
AB3
A
358 368Right-handed alpha
Helix 13
AB4
A
368 383Right-handed alpha
Helix 14
AB5
B
9 20Right-handed alpha
Helix 15
AB6
B
21 28Right-handed 310
Helix 16
AB7
B
29 40Right-handed alpha
Helix 17
AB8
B
84 87Right-handed 310
Helix 18
AB9
B
176 182Right-handed 310
Helix 19
AC1
B
210 212Right-handed 310
Helix 20
AC2
B
229 234Right-handed 310
Helix 21
AC3
B
241 245Right-handed 310
Helix 22
AC4
B
255 260Right-handed alpha
Helix 23
AC5
B
331 338Right-handed alpha
Helix 24
AC6
B
358 368Right-handed alpha
Helix 25
AC7
B
368 383Right-handed alpha
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There are 4 sheets in PDB entry 6M63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
351 357anti-parallel
Strand 3
A
60 66anti-parallel
Strand 4
A
329 330anti-parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
343 347anti-parallel
Strand 3
A
69 83anti-parallel
Strand 4
A
127 136anti-parallel
Strand 5
A
145 155anti-parallel
Strand 6
A
214 221anti-parallel
Strand 7
A
198 209anti-parallel
Strand 8
A
185 195anti-parallel
Strand 9
A
291 301parallel
Strand 10
A
278 288anti-parallel
Strand 11
A
265 273anti-parallel
Strand 12
A
104 115anti-parallel
Strand 13
A
88 98anti-parallel
Strand 14
A
69 83anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 45first strand
Strand 2
B
351 357anti-parallel
Strand 3
B
60 66anti-parallel
Strand 4
B
329 330anti-parallel
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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
343 347anti-parallel
Strand 3
B
69 83anti-parallel
Strand 4
B
127 136anti-parallel
Strand 5
B
145 155anti-parallel
Strand 6
B
214 221anti-parallel
Strand 7
B
198 209anti-parallel
Strand 8
B
185 195anti-parallel
Strand 9
B
291 301parallel
Strand 10
B
278 288anti-parallel
Strand 11
B
265 273anti-parallel
Strand 12
B
104 115anti-parallel
Strand 13
B
88 98anti-parallel
Strand 14
B
69 83anti-parallel
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