Analysis of interatomic Contacts of Structural Units in PDB entry:
6M6B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M6B entry

There are 8 chains in PDB entry 6M6B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	GLN 229
B	LYS 7	PRO 228
C	MET 1	LYS 1118
D	LYS 3	ALA 1502
E	ALA 2	VAL 95
M	GLY 322	LYS 825
T	G 1	G 39
N	C 1	C 39

There are124 helices in PDB entry 6M6B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	47	Right-handed alpha
Helix 2	AA2	A	74	85	Right-handed alpha
Helix 3	AA3	A	112	114	Right-handed 310
Helix 4	AA4	A	152	156	Right-handed 310
Helix 5	AA5	A	206	223	Right-handed alpha
Helix 6	AA6	A	224	226	Right-handed 310
Helix 7	AA7	B	31	47	Right-handed alpha
Helix 8	AA8	B	74	84	Right-handed alpha
Helix 9	AA9	B	112	114	Right-handed 310
Helix 10	AB1	B	152	157	Right-handed alpha
Helix 11	AB2	B	206	223	Right-handed alpha
Helix 12	AB3	C	19	31	Right-handed alpha
Helix 13	AB4	C	35	39	Right-handed 310
Helix 14	AB5	C	43	52	Right-handed alpha
Helix 15	AB6	C	79	86	Right-handed alpha
Helix 16	AB7	C	193	200	Right-handed alpha
Helix 17	AB8	C	203	211	Right-handed alpha
Helix 18	AB9	C	214	222	Right-handed alpha
Helix 19	AC1	C	224	229	Right-handed alpha
Helix 20	AC2	C	230	243	Right-handed alpha
Helix 21	AC3	C	249	262	Right-handed alpha
Helix 22	AC4	C	270	282	Right-handed alpha
Helix 23	AC5	C	302	315	Right-handed alpha
Helix 24	AC6	C	335	360	Right-handed alpha
Helix 25	AC7	C	369	373	Right-handed 310
Helix 26	AC8	C	375	389	Right-handed alpha
Helix 27	AC9	C	399	408	Right-handed alpha
Helix 28	AD1	C	445	449	Right-handed 310
Helix 29	AD2	C	487	492	Right-handed alpha
Helix 30	AD3	C	525	529	Right-handed 310
Helix 31	AD4	C	535	539	Right-handed 310
Helix 32	AD5	C	543	547	Right-handed 310
Helix 33	AD6	C	549	553	Right-handed 310
Helix 34	AD7	C	554	565	Right-handed alpha
Helix 35	AD8	C	566	568	Right-handed 310
Helix 36	AD9	C	585	591	Right-handed alpha
Helix 37	AE1	C	692	697	Right-handed alpha
Helix 38	AE2	C	768	779	Right-handed alpha
Helix 39	AE3	C	854	858	Right-handed 310
Helix 40	AE4	C	872	876	Right-handed 310
Helix 41	AE5	C	882	898	Right-handed alpha
Helix 42	AE6	C	910	932	Right-handed alpha
Helix 43	AE7	C	937	949	Right-handed alpha
Helix 44	AE8	C	958	970	Right-handed alpha
Helix 45	AE9	C	1023	1027	Right-handed 310
Helix 46	AF1	C	1033	1044	Right-handed alpha
Helix 47	AF2	C	1045	1054	Right-handed alpha
Helix 48	AF3	C	1060	1073	Right-handed alpha
Helix 49	AF4	C	1082	1095	Right-handed alpha
Helix 50	AF5	D	14	21	Right-handed alpha
Helix 51	AF6	D	46	51	Right-handed alpha
Helix 52	AF7	D	82	87	Right-handed 310
Helix 53	AF8	D	101	107	Right-handed alpha
Helix 54	AF9	D	110	117	Right-handed alpha
Helix 55	AG1	D	119	128	Right-handed alpha
Helix 56	AG2	D	154	163	Right-handed alpha
Helix 57	AG3	D	423	426	Right-handed 310
Helix 58	AG4	D	457	466	Right-handed alpha
Helix 59	AG5	D	469	483	Right-handed alpha
Helix 60	AG6	D	485	506	Right-handed alpha
Helix 61	AG7	D	508	511	Right-handed 310
Helix 62	AG8	D	538	561	Right-handed alpha
Helix 63	AG9	D	563	584	Right-handed alpha
Helix 64	AH1	D	602	608	Right-handed alpha
Helix 65	AH2	D	615	619	Right-handed 310
Helix 66	AH3	D	646	653	Right-handed alpha
Helix 67	AH4	D	653	664	Right-handed alpha
Helix 68	AH5	D	669	678	Right-handed alpha
Helix 69	AH6	D	679	683	Right-handed 310
Helix 70	AH7	D	685	695	Right-handed alpha
Helix 71	AH8	D	709	711	Right-handed 310
Helix 72	AH9	D	729	733	Right-handed 310
Helix 73	AI1	D	752	762	Right-handed alpha
Helix 74	AI2	D	764	768	Right-handed 310
Helix 75	AI3	D	782	794	Right-handed alpha
Helix 76	AI4	D	808	818	Right-handed alpha
Helix 77	AI5	D	836	841	Right-handed alpha
Helix 78	AI6	D	845	855	Right-handed alpha
Helix 79	AI7	D	876	891	Right-handed alpha
Helix 80	AI8	D	892	900	Right-handed alpha
Helix 81	AI9	D	907	923	Right-handed alpha
Helix 82	AJ1	D	924	946	Right-handed alpha
Helix 83	AJ2	D	950	954	Right-handed 310
Helix 84	AJ3	D	958	980	Right-handed alpha
Helix 85	AJ4	D	984	1015	Right-handed alpha
Helix 86	AJ5	D	1018	1027	Right-handed alpha
Helix 87	AJ6	D	1031	1040	Right-handed alpha
Helix 88	AJ7	D	1066	1102	Right-handed alpha
Helix 89	AJ8	D	1136	1145	Right-handed alpha
Helix 90	AJ9	D	1167	1181	Right-handed alpha
Helix 91	AK1	D	1220	1231	Right-handed alpha
Helix 92	AK2	D	1232	1236	Right-handed 310
Helix 93	AK3	D	1255	1265	Right-handed alpha
Helix 94	AK4	D	1331	1359	Right-handed alpha
Helix 95	AK5	D	1365	1376	Right-handed alpha
Helix 96	AK6	D	1397	1408	Right-handed alpha
Helix 97	AK7	D	1423	1430	Right-handed alpha
Helix 98	AK8	D	1433	1441	Right-handed alpha
Helix 99	AK9	D	1442	1454	Right-handed alpha
Helix 100	AL1	D	1462	1468	Right-handed alpha
Helix 101	AL2	D	1474	1478	Right-handed 310
Helix 102	AL3	D	1489	1501	Right-handed alpha
Helix 103	AL4	E	5	13	Right-handed alpha
Helix 104	AL5	E	15	33	Right-handed alpha
Helix 105	AL6	E	59	71	Right-handed alpha
Helix 106	AL7	E	81	93	Right-handed alpha
Helix 107	AL8	M	366	368	Right-handed 310
Helix 108	AL9	M	407	420	Right-handed alpha
Helix 109	AM1	M	430	438	Right-handed alpha
Helix 110	AM2	M	444	460	Right-handed alpha
Helix 111	AM3	M	475	490	Right-handed alpha
Helix 112	AM4	M	500	515	Right-handed alpha
Helix 113	AM5	M	530	543	Right-handed alpha
Helix 114	AM6	M	553	558	Right-handed alpha
Helix 115	AM7	M	572	576	Right-handed 310
Helix 116	AM8	M	578	588	Right-handed alpha
Helix 117	AM9	M	605	613	Right-handed alpha
Helix 118	AN1	M	636	651	Right-handed alpha
Helix 119	AN2	M	664	675	Right-handed alpha
Helix 120	AN3	M	688	702	Right-handed alpha
Helix 121	AN4	M	734	745	Right-handed alpha
Helix 122	AN5	M	763	775	Right-handed alpha
Helix 123	AN6	M	781	796	Right-handed alpha
Helix 124	AN7	M	812	825	Right-handed alpha

There are 50 sheets in PDB entry 6M6B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	16	first strand
Strand 2	A	20	28	anti-parallel
Strand 3	A	192	201	anti-parallel
Strand 4	A	174	184	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	104	first strand
Strand 2	A	137	148	anti-parallel
Strand 3	A	49	58	anti-parallel
Strand 4	A	165	166	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	120	122	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	128	131	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	169	170	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	16	first strand
Strand 2	B	20	28	anti-parallel
Strand 3	B	189	201	anti-parallel
Strand 4	B	174	186	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	104	first strand
Strand 2	B	137	147	anti-parallel
Strand 3	B	50	58	anti-parallel
Strand 4	B	165	166	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	121	122	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	110	first strand
Strand 2	B	128	132	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	169	170	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	899	902	parallel
Strand 3	C	579	580	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	73	first strand
Strand 2	C	91	101	anti-parallel
Strand 3	C	108	119	anti-parallel
Strand 4	M	359	364	anti-parallel
Strand 5	M	350	355	anti-parallel
Strand 6	M	331	339	anti-parallel
Strand 7	M	324	327	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	132	136	anti-parallel
Strand 3	C	392	394	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	334	first strand
Strand 2	C	138	142	anti-parallel
Strand 3	C	409	411	parallel
Strand 4	C	453	454	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	158	163	anti-parallel
Strand 3	C	172	176	anti-parallel
Strand 4	C	182	186	anti-parallel
Strand 5	C	189	192	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	294	first strand
Strand 2	C	297	299	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	461	first strand
Strand 2	C	467	475	anti-parallel
Strand 3	C	478	486	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	461	first strand
Strand 2	C	467	475	anti-parallel
Strand 3	C	531	532	anti-parallel
Strand 4	C	495	497	parallel
Strand 5	C	513	517	anti-parallel
Strand 6	C	520	524	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	503	504	first strand
Strand 2	C	507	508	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	596	first strand
Strand 2	C	654	657	anti-parallel
Strand 3	C	640	641	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	620	624	first strand
Strand 2	C	610	615	anti-parallel
Strand 3	C	601	606	anti-parallel
Strand 4	C	648	649	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	629	630	first strand
Strand 2	C	636	637	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	661	662	first strand
Strand 2	C	665	666	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	971	972	first strand
Strand 2	C	987	996	anti-parallel
Strand 3	C	838	841	anti-parallel
Strand 4	C	847	853	anti-parallel
Strand 5	C	688	691	parallel
Strand 6	C	869	871	anti-parallel
Strand 7	C	670	676	parallel
Strand 8	C	987	996	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	702	713	first strand
Strand 2	C	819	831	anti-parallel
Strand 3	C	798	807	anti-parallel
Strand 4	C	748	749	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	754	756	first strand
Strand 2	C	790	791	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	761	first strand
Strand 2	C	785	787	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1006	1008	first strand
Strand 2	D	626	633	anti-parallel
Strand 3	D	744	748	anti-parallel
Strand 4	D	700	703	anti-parallel
Strand 5	D	713	721	anti-parallel
Strand 6	D	641	645	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1006	1008	first strand
Strand 2	D	626	633	anti-parallel
Strand 3	D	726	728	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1031	1032	first strand
Strand 2	D	621	622	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1099	1102	first strand
Strand 2	D	7	10	anti-parallel
Strand 3	D	1456	1457	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	25	first strand
Strand 2	D	90	100	parallel
Strand 3	D	513	519	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	132	136	anti-parallel
Strand 3	D	453	455	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	145	146	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	170	first strand
Strand 2	D	392	396	anti-parallel
Strand 3	D	201	204	anti-parallel
Strand 4	D	183	185	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	402	first strand
Strand 2	D	443	448	anti-parallel
Strand 3	D	433	436	anti-parallel
Strand 4	D	414	415	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	419	422	first strand
Strand 2	D	427	429	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	529	first strand
Strand 2	D	535	536	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	827	828	first strand
Strand 2	D	833	834	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	842	843	first strand
Strand 2	D	864	868	parallel
Strand 3	D	871	875	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1106	1109	first strand
Strand 2	D	1199	1201	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1118	1121	first strand
Strand 2	D	1185	1188	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1123	1126	first strand
Strand 2	D	1131	1134	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1153	1155	first strand
Strand 2	D	1158	1160	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1300	1305	first strand
Strand 2	D	1290	1295	anti-parallel
Strand 3	D	1279	1285	anti-parallel
Strand 4	D	1317	1319	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1394	1396	first strand
Strand 2	D	1378	1383	anti-parallel
Strand 3	D	1416	1419	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1485	1487	first strand
Strand 2	E	74	76	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	49	first strand
Strand 2	E	54	56	anti-parallel

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There are 7 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	522	525	first strand
Strand 2	M	548	551	parallel
Strand 3	M	494	497	parallel
Strand 4	M	567	570	parallel
Strand 5	M	592	595	parallel
Strand 6	M	465	467	parallel
Strand 7	M	614	615	parallel

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There are 6 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	629	633	first strand
Strand 2	M	753	757	parallel
Strand 3	M	722	727	parallel
Strand 4	M	653	656	parallel
Strand 5	M	706	708	parallel
Strand 6	M	680	682	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M6B

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M6B