Analysis of interatomic Contacts of Structural Units in PDB entry:
6M6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M6M entry

There are 2 chains in PDB entry 6M6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 0GLU 446
B
 MET 1GLU 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6M6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 23Right-handed alpha
Helix 2
AA2
A
34 40Right-handed alpha
Helix 3
AA3
A
46 50Right-handed 310
Helix 4
AA4
A
57 73Right-handed alpha
Helix 5
AA5
A
82 87Right-handed alpha
Helix 6
AA6
A
95 112Right-handed alpha
Helix 7
AA7
A
126 131Right-handed alpha
Helix 8
AA8
A
132 136Right-handed 310
Helix 9
AA9
A
137 156Right-handed alpha
Helix 10
AB1
A
167 177Right-handed alpha
Helix 11
AB2
A
187 213Right-handed alpha
Helix 12
AB3
A
234 249Right-handed alpha
Helix 13
AB4
A
249 257Right-handed alpha
Helix 14
AB5
A
262 270Right-handed alpha
Helix 15
AB6
A
278 284Right-handed alpha
Helix 16
AB7
A
329 343Right-handed alpha
Helix 17
AB8
A
370 390Right-handed alpha
Helix 18
AB9
A
407 411Right-handed 310
Helix 19
AC1
A
431 446Right-handed alpha
Helix 20
AC2
B
18 23Right-handed alpha
Helix 21
AC3
B
34 40Right-handed alpha
Helix 22
AC4
B
46 50Right-handed 310
Helix 23
AC5
B
57 73Right-handed alpha
Helix 24
AC6
B
82 87Right-handed alpha
Helix 25
AC7
B
95 112Right-handed alpha
Helix 26
AC8
B
126 131Right-handed alpha
Helix 27
AC9
B
132 137Right-handed 310
Helix 28
AD1
B
138 156Right-handed alpha
Helix 29
AD2
B
167 177Right-handed alpha
Helix 30
AD3
B
187 213Right-handed alpha
Helix 31
AD4
B
234 249Right-handed alpha
Helix 32
AD5
B
249 257Right-handed alpha
Helix 33
AD6
B
262 270Right-handed alpha
Helix 34
AD7
B
278 284Right-handed alpha
Helix 35
AD8
B
329 342Right-handed alpha
Helix 36
AD9
B
370 390Right-handed alpha
Helix 37
AE1
B
407 411Right-handed 310
Helix 38
AE2
B
431 446Right-handed alpha
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There are 6 sheets in PDB entry 6M6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
76 80parallel
Strand 3
A
115 121parallel
Strand 4
A
161 166parallel
Strand 5
A
218 224parallel
Strand 6
A
290 293parallel
Strand 7
A
349 353parallel
Strand 8
A
394 400parallel
Strand 9
A
12 16parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
298 302parallel
Strand 3
A
311 314anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 422first strand
Strand 2
A
427 430anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
76 80parallel
Strand 3
B
115 121parallel
Strand 4
B
161 166parallel
Strand 5
B
218 224parallel
Strand 6
B
289 293parallel
Strand 7
B
349 354parallel
Strand 8
B
394 400parallel
Strand 9
B
12 16parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 230first strand
Strand 2
B
298 302parallel
Strand 3
B
311 314anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 422first strand
Strand 2
B
427 430anti-parallel
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