Analysis of interatomic Contacts of Structural Units in PDB entry:
6M6S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M6S entry

There are 4 chains in PDB entry 6M6S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 945HIS 1104
B
 ASN 945GLN 1106
C
 G 2 C 12
D
 G 2 C 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6M6S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
976 981Right-handed 310
Helix 2
AA2
A
1048 1056Right-handed alpha
Helix 3
AA3
A
1063 1071Right-handed alpha
Helix 4
AA4
A
1077 1102Right-handed alpha
Helix 5
AA5
B
976 981Right-handed 310
Helix 6
AA6
B
1048 1056Right-handed alpha
Helix 7
AA7
B
1063 1071Right-handed alpha
Helix 8
AA8
B
1077 1106Right-handed alpha
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There are 5 sheets in PDB entry 6M6S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 961first strand
Strand 2
A
948 952anti-parallel
Strand 3
A
1033 1037anti-parallel
Strand 4
A
1043 1045anti-parallel
Strand 5
B
1042 1044parallel
Strand 6
B
1033 1037anti-parallel
Strand 7
B
949 952anti-parallel
Strand 8
B
958 961anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
965 968first strand
Strand 2
A
971 974anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
983 986first strand
Strand 2
A
999 1007anti-parallel
Strand 3
A
1013 1020anti-parallel
Strand 4
A
1023 1028anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
971 974first strand
Strand 2
B
965 968anti-parallel
Strand 3
B
1060 1061parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
983 986first strand
Strand 2
B
999 1007anti-parallel
Strand 3
B
1013 1020anti-parallel
Strand 4
B
1023 1028anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il