Analysis of interatomic Contacts of Structural Units in PDB entry:
6M78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M78 entry

There are 2 chains in PDB entry 6M78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 135GLU 325
B
 GLY 323GLU 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 6M78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
223 231Right-handed alpha
Helix 2
AA2
A
312 319Right-handed alpha
Helix 3
AA3
B
336 341Right-handed 310
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There are 3 sheets in PDB entry 6M78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
256 266anti-parallel
Strand 3
A
272 275anti-parallel
Strand 4
A
307 311anti-parallel
Strand 5
A
294 303anti-parallel
Strand 6
A
287 289anti-parallel
Strand 7
A
244 253anti-parallel
Strand 8
A
256 266anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 200first strand
Strand 2
A
191 194anti-parallel
Strand 3
A
152 157anti-parallel
Strand 4
A
160 168anti-parallel
Strand 5
A
175 179anti-parallel
Strand 6
A
217 220anti-parallel
Strand 7
A
206 208anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 353first strand
Strand 2
B
357 361anti-parallel
Strand 3
B
366 369anti-parallel
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