Analysis of interatomic Contacts of Structural Units in PDB entry:
6M7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M7D entry

There are 2 chains in PDB entry 6M7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3GLY 414
B
 U 1 U 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6M7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 10Right-handed alpha
Helix 2
AA2
A
10 20Right-handed alpha
Helix 3
AA3
A
46 63Right-handed alpha
Helix 4
AA4
A
67 81Right-handed alpha
Helix 5
AA5
A
85 94Right-handed alpha
Helix 6
AA6
A
128 136Right-handed alpha
Helix 7
AA7
A
153 161Right-handed alpha
Helix 8
AA8
A
162 182Right-handed alpha
Helix 9
AA9
A
187 203Right-handed alpha
Helix 10
AB1
A
206 210Right-handed 310
Helix 11
AB2
A
212 226Right-handed alpha
Helix 12
AB3
A
226 240Right-handed alpha
Helix 13
AB4
A
248 262Right-handed alpha
Helix 14
AB5
A
266 277Right-handed alpha
Helix 15
AB6
A
281 286Right-handed 310
Helix 16
AB7
A
289 306Right-handed alpha
Helix 17
AB8
A
307 313Right-handed 310
Helix 18
AB9
A
318 328Right-handed 310
Helix 19
AC1
A
329 344Right-handed alpha
Helix 20
AC2
A
345 350Right-handed 310
Helix 21
AC3
A
358 371Right-handed alpha
Helix 22
AC4
A
380 385Right-handed alpha
Helix 23
AC5
A
387 402Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6M7D.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 40first strand
Strand 2
A
99 108parallel
Strand 3
A
118 122anti-parallel
Strand 4
A
125 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il