Analysis of interatomic Contacts of Structural Units in PDB entry:
6M7Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M7Y entry

There are 6 chains in PDB entry 6M7Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 5	GLU 990
B	SER 5	GLU 990
C	THR -21	THR 2
C	ILE 4	ILE 4
D	THR -21	THR 2
D	ILE 4	ILE 4

There are 85 helices in PDB entry 6M7Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	23	Right-handed 310
Helix 2	AA2	A	28	37	Right-handed alpha
Helix 3	AA3	A	39	50	Right-handed alpha
Helix 4	AA4	A	50	62	Right-handed alpha
Helix 5	AA5	A	66	68	Right-handed 310
Helix 6	AA6	A	69	87	Right-handed alpha
Helix 7	AA7	A	121	136	Right-handed alpha
Helix 8	AA8	A	137	139	Right-handed 310
Helix 9	AA9	A	174	184	Right-handed alpha
Helix 10	AB1	A	191	200	Right-handed alpha
Helix 11	AB2	A	201	202	Right-handed 310
Helix 12	AB3	A	203	205	Right-handed 310
Helix 13	AB4	A	206	220	Right-handed alpha
Helix 14	AB5	A	227	229	Right-handed 310
Helix 15	AB6	A	236	248	Right-handed alpha
Helix 16	AB7	A	255	268	Right-handed alpha
Helix 17	AB8	A	275	290	Right-handed alpha
Helix 18	AB9	A	309	326	Right-handed alpha
Helix 19	AC1	A	327	330	Right-handed 310
Helix 20	AC2	A	333	347	Right-handed alpha
Helix 21	AC3	A	354	358	Right-handed alpha
Helix 22	AC4	A	388	405	Right-handed alpha
Helix 23	AC5	A	414	421	Right-handed alpha
Helix 24	AC6	A	465	468	Right-handed 310
Helix 25	AC7	A	469	490	Right-handed alpha
Helix 26	AC8	A	503	509	Right-handed 310
Helix 27	AC9	A	532	534	Right-handed 310
Helix 28	AD1	A	566	570	Right-handed 310
Helix 29	AD2	A	571	581	Right-handed alpha
Helix 30	AD3	A	589	596	Right-handed alpha
Helix 31	AD4	A	621	623	Right-handed 310
Helix 32	AD5	A	628	636	Right-handed alpha
Helix 33	AD6	A	657	675	Right-handed alpha
Helix 34	AD7	A	725	729	Right-handed alpha
Helix 35	AD8	A	745	756	Right-handed alpha
Helix 36	AD9	A	756	767	Right-handed alpha
Helix 37	AE1	A	791	809	Right-handed alpha
Helix 38	AE2	A	829	856	Right-handed alpha
Helix 39	AE3	A	862	879	Right-handed alpha
Helix 40	AE4	A	882	892	Right-handed alpha
Helix 41	AE5	A	925	945	Right-handed alpha
Helix 42	AE6	A	948	968	Right-handed alpha
Helix 43	AE7	A	975	988	Right-handed alpha
Helix 44	AE8	B	19	23	Right-handed 310
Helix 45	AE9	B	28	37	Right-handed alpha
Helix 46	AF1	B	39	50	Right-handed alpha
Helix 47	AF2	B	50	62	Right-handed alpha
Helix 48	AF3	B	66	87	Right-handed alpha
Helix 49	AF4	B	121	136	Right-handed alpha
Helix 50	AF5	B	137	139	Right-handed 310
Helix 51	AF6	B	174	184	Right-handed alpha
Helix 52	AF7	B	191	203	Right-handed alpha
Helix 53	AF8	B	206	220	Right-handed alpha
Helix 54	AF9	B	227	229	Right-handed 310
Helix 55	AG1	B	236	248	Right-handed alpha
Helix 56	AG2	B	253	269	Right-handed alpha
Helix 57	AG3	B	275	288	Right-handed alpha
Helix 58	AG4	B	309	327	Right-handed alpha
Helix 59	AG5	B	328	330	Right-handed 310
Helix 60	AG6	B	333	347	Right-handed alpha
Helix 61	AG7	B	354	359	Right-handed alpha
Helix 62	AG8	B	388	406	Right-handed alpha
Helix 63	AG9	B	414	421	Right-handed alpha
Helix 64	AH1	B	465	468	Right-handed 310
Helix 65	AH2	B	469	490	Right-handed alpha
Helix 66	AH3	B	503	510	Right-handed 310
Helix 67	AH4	B	532	534	Right-handed 310
Helix 68	AH5	B	566	570	Right-handed 310
Helix 69	AH6	B	571	580	Right-handed alpha
Helix 70	AH7	B	589	596	Right-handed alpha
Helix 71	AH8	B	621	623	Right-handed 310
Helix 72	AH9	B	628	636	Right-handed alpha
Helix 73	AI1	B	657	674	Right-handed alpha
Helix 74	AI2	B	725	729	Right-handed alpha
Helix 75	AI3	B	748	756	Right-handed alpha
Helix 76	AI4	B	756	767	Right-handed alpha
Helix 77	AI5	B	791	809	Right-handed alpha
Helix 78	AI6	B	824	828	Right-handed 310
Helix 79	AI7	B	829	856	Right-handed alpha
Helix 80	AI8	B	862	880	Right-handed alpha
Helix 81	AI9	B	882	891	Right-handed alpha
Helix 82	AJ1	B	926	945	Right-handed alpha
Helix 83	AJ2	B	948	968	Right-handed alpha
Helix 84	AJ3	B	975	989	Right-handed alpha
Helix 85	AJ4	D	-21	-17	Right-handed 310

There are 17 sheets in PDB entry 6M7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	120	first strand
Strand 2	A	296	301	anti-parallel
Strand 3	A	95	102	parallel
Strand 4	A	307	308	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	120	first strand
Strand 2	A	296	301	anti-parallel
Strand 3	A	95	102	parallel
Strand 4	A	11	16	anti-parallel
Strand 5	A	699	705	anti-parallel
Strand 6	A	432	441	anti-parallel
Strand 7	A	444	455	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	190	first strand
Strand 2	A	141	144	anti-parallel
Strand 3	A	223	225	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	151	first strand
Strand 2	A	154	157	anti-parallel
Strand 3	A	168	172	anti-parallel
Strand 4	C	-13	-11	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	530	first strand
Strand 2	A	518	522	parallel
Strand 3	A	493	499	parallel
Strand 4	A	555	560	parallel
Strand 5	A	546	550	anti-parallel
Strand 6	A	536	540	anti-parallel
Strand 7	A	350	353	anti-parallel
Strand 8	A	721	722	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	604	606	parallel
Strand 3	A	609	612	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	600	601	first strand
Strand 2	A	615	619	anti-parallel
Strand 3	A	677	682	anti-parallel
Strand 4	A	641	645	anti-parallel
Strand 5	A	650	654	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	731	first strand
Strand 2	A	820	821	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	776	first strand
Strand 2	A	782	788	anti-parallel
Strand 3	A	737	744	anti-parallel
Strand 4	A	812	817	anti-parallel
Strand 5	B	812	818	anti-parallel
Strand 6	B	737	744	anti-parallel
Strand 7	B	782	788	anti-parallel
Strand 8	B	770	776	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	120	first strand
Strand 2	B	296	308	anti-parallel
Strand 3	B	95	102	parallel
Strand 4	B	11	16	anti-parallel
Strand 5	B	699	704	anti-parallel
Strand 6	B	433	441	anti-parallel
Strand 7	B	444	455	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	190	first strand
Strand 2	B	141	144	anti-parallel
Strand 3	B	223	225	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	154	157	anti-parallel
Strand 3	B	168	172	anti-parallel
Strand 4	D	-13	-11	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	522	first strand
Strand 2	B	492	499	parallel
Strand 3	B	556	560	parallel
Strand 4	B	546	550	anti-parallel
Strand 5	B	536	540	anti-parallel
Strand 6	B	350	353	anti-parallel
Strand 7	B	721	722	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	604	606	parallel
Strand 3	B	609	612	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	600	601	first strand
Strand 2	B	615	619	anti-parallel
Strand 3	B	677	682	anti-parallel
Strand 4	B	641	645	anti-parallel
Strand 5	B	650	654	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	690	691	first strand
Strand 2	B	696	697	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	730	731	first strand
Strand 2	B	820	821	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M7Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M7Y