Analysis of interatomic Contacts of Structural Units in PDB entry:
6M8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M8N entry

There is 1 chain in PDB entry 6M8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 36ILE 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6M8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 45Right-handed 310
Helix 2
AA2
A
56 64Right-handed alpha
Helix 3
AA3
A
65 67Right-handed 310
Helix 4
AA4
A
68 80Right-handed alpha
Helix 5
AA5
A
108 113Right-handed alpha
Helix 6
AA6
A
114 117Right-handed 310
Helix 7
AA7
A
119 136Right-handed alpha
Helix 8
AA8
A
147 156Right-handed 310
Helix 9
AA9
A
157 172Right-handed alpha
Helix 10
AB1
A
175 192Right-handed alpha
Helix 11
AB2
A
202 206Right-handed 310
Helix 12
AB3
A
209 221Right-handed alpha
Helix 13
AB4
A
279 283Right-handed 310
Helix 14
AB5
A
288 294Right-handed alpha
Helix 15
AB6
A
294 302Right-handed alpha
Helix 16
AB7
A
335 349Right-handed alpha
Helix 17
AB8
A
365 380Right-handed alpha
Helix 18
AB9
A
400 402Right-handed 310
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There are 6 sheets in PDB entry 6M8N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
197 201parallel
Strand 3
A
139 145parallel
Strand 4
A
85 89parallel
Strand 5
A
48 51parallel
Strand 6
A
352 356parallel
Strand 7
A
316 320parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
95 99anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
261 262anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
244 247anti-parallel
Strand 3
A
397 398anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 306first strand
Strand 2
A
312 314anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
363 364anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il