Analysis of interatomic Contacts of Structural Units in PDB entry:
6M8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M8Q entry

There are 2 chains in PDB entry 6M8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9ARG 459
B
 GLU 7ARG 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6M8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 53Right-handed 310
Helix 2
AA2
A
55 59Right-handed 310
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
73 78Right-handed alpha
Helix 5
AA5
A
79 86Right-handed alpha
Helix 6
AA6
A
97 114Right-handed alpha
Helix 7
AA7
A
124 132Right-handed alpha
Helix 8
AA8
A
214 232Right-handed alpha
Helix 9
AA9
A
245 260Right-handed alpha
Helix 10
AB1
A
261 264Right-handed 310
Helix 11
AB2
A
274 285Right-handed alpha
Helix 12
AB3
A
286 289Right-handed 310
Helix 13
AB4
A
290 297Right-handed alpha
Helix 14
AB5
A
313 317Right-handed 310
Helix 15
AB6
A
334 345Right-handed alpha
Helix 16
AB7
A
362 367Right-handed alpha
Helix 17
AB8
A
368 370Right-handed 310
Helix 18
AB9
A
398 410Right-handed alpha
Helix 19
AC1
A
420 437Right-handed alpha
Helix 20
AC2
B
48 53Right-handed 310
Helix 21
AC3
B
55 59Right-handed 310
Helix 22
AC4
B
60 64Right-handed 310
Helix 23
AC5
B
73 78Right-handed alpha
Helix 24
AC6
B
79 86Right-handed alpha
Helix 25
AC7
B
97 114Right-handed alpha
Helix 26
AC8
B
124 132Right-handed alpha
Helix 27
AC9
B
214 232Right-handed alpha
Helix 28
AD1
B
245 259Right-handed alpha
Helix 29
AD2
B
260 264Right-handed 310
Helix 30
AD3
B
274 284Right-handed alpha
Helix 31
AD4
B
285 289Right-handed 310
Helix 32
AD5
B
290 295Right-handed alpha
Helix 33
AD6
B
334 345Right-handed alpha
Helix 34
AD7
B
362 367Right-handed alpha
Helix 35
AD8
B
368 370Right-handed 310
Helix 36
AD9
B
398 410Right-handed alpha
Helix 37
AE1
B
420 436Right-handed alpha
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There are 8 sheets in PDB entry 6M8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
92 96parallel
Strand 3
A
66 68parallel
Strand 4
A
35 39parallel
Strand 5
A
27 32anti-parallel
Strand 6
A
10 18anti-parallel
Strand 7
A
454 458anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
149 155anti-parallel
Strand 3
A
163 169anti-parallel
Strand 4
A
172 176anti-parallel
Strand 5
A
200 204parallel
Strand 6
A
413 417parallel
Strand 7
A
444 446parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 311first strand
Strand 2
A
268 271parallel
Strand 3
A
324 327parallel
Strand 4
A
236 239parallel
Strand 5
A
351 354parallel
Strand 6
A
387 390parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 375first strand
Strand 2
A
381 383anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 138first strand
Strand 2
B
92 96parallel
Strand 3
B
66 68parallel
Strand 4
B
35 39parallel
Strand 5
B
27 32anti-parallel
Strand 6
B
11 18anti-parallel
Strand 7
B
454 457anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
149 155anti-parallel
Strand 3
B
163 169anti-parallel
Strand 4
B
172 176anti-parallel
Strand 5
B
200 204parallel
Strand 6
B
413 417parallel
Strand 7
B
444 446parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 310first strand
Strand 2
B
268 271parallel
Strand 3
B
323 327parallel
Strand 4
B
235 239parallel
Strand 5
B
351 354parallel
Strand 6
B
387 390parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 375first strand
Strand 2
B
381 383anti-parallel
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