Analysis of interatomic Contacts of Structural Units in PDB entry:
6M8S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M8S entry

There are 15 chains in PDB entry 6M8S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 2	ASN 340
D	SER 2	ASN 340
G	SER 2	ASN 340
H	SER 2	ASN 340
I	SER 8	ARG 62
J	SER 8	ARG 62
K	SER 2	ASN 340
L	SER 8	PHE 61
A	ARG 206	ARG 324
O	ARG 206	ARG 324
P	ARG 206	ARG 324
B	ARG 206	ARG 324
E	SER 8	ARG 62
F	SER 8	ARG 62
M	ARG 206	ARG 324

There are 39 helices in PDB entry 6M8S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	2	26	Right-handed alpha
Helix 2	AA2	C	29	34	Right-handed alpha
Helix 3	AA3	D	3	26	Right-handed alpha
Helix 4	AA4	D	29	34	Right-handed alpha
Helix 5	AA5	G	3	26	Right-handed alpha
Helix 6	AA6	G	29	34	Right-handed alpha
Helix 7	AA7	H	3	26	Right-handed alpha
Helix 8	AA8	H	29	34	Right-handed alpha
Helix 9	AA9	I	9	24	Right-handed alpha
Helix 10	AB1	I	29	45	Right-handed alpha
Helix 11	AB2	I	46	48	Right-handed 310
Helix 12	AB3	I	55	59	Right-handed 310
Helix 13	AB4	J	9	24	Right-handed alpha
Helix 14	AB5	J	29	45	Right-handed alpha
Helix 15	AB6	J	46	48	Right-handed 310
Helix 16	AB7	J	55	59	Right-handed 310
Helix 17	AB8	K	3	26	Right-handed alpha
Helix 18	AB9	K	29	34	Right-handed alpha
Helix 19	AC1	L	9	24	Right-handed alpha
Helix 20	AC2	L	29	45	Right-handed alpha
Helix 21	AC3	L	46	48	Right-handed 310
Helix 22	AC4	A	242	250	Right-handed alpha
Helix 23	AC5	A	276	286	Right-handed alpha
Helix 24	AC6	O	242	250	Right-handed alpha
Helix 25	AC7	O	276	286	Right-handed alpha
Helix 26	AC8	P	242	249	Right-handed alpha
Helix 27	AC9	P	276	286	Right-handed alpha
Helix 28	AD1	B	242	250	Right-handed alpha
Helix 29	AD2	B	276	286	Right-handed alpha
Helix 30	AD3	E	9	24	Right-handed alpha
Helix 31	AD4	E	29	45	Right-handed alpha
Helix 32	AD5	E	46	48	Right-handed 310
Helix 33	AD6	E	55	59	Right-handed 310
Helix 34	AD7	F	9	24	Right-handed alpha
Helix 35	AD8	F	29	45	Right-handed alpha
Helix 36	AD9	F	46	48	Right-handed 310
Helix 37	AE1	F	55	59	Right-handed 310
Helix 38	AE2	M	242	250	Right-handed alpha
Helix 39	AE3	M	276	286	Right-handed alpha

There are 40 sheets in PDB entry 6M8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	336	339	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	105	first strand
Strand 2	C	111	115	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	135	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	175	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	208	212	anti-parallel
Strand 4	C	217	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	304	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	51	first strand
Strand 2	D	336	339	anti-parallel
Strand 3	D	327	331	anti-parallel
Strand 4	D	315	320	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	88	94	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	105	first strand
Strand 2	D	111	115	anti-parallel
Strand 3	D	121	125	anti-parallel
Strand 4	D	135	139	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	151	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	166	170	anti-parallel
Strand 4	D	175	180	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	208	212	anti-parallel
Strand 4	D	217	222	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	234	first strand
Strand 2	D	240	245	anti-parallel
Strand 3	D	250	254	anti-parallel
Strand 4	D	259	264	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	294	298	anti-parallel
Strand 4	D	304	308	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	51	first strand
Strand 2	G	336	339	anti-parallel
Strand 3	G	327	331	anti-parallel
Strand 4	G	315	320	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	63	first strand
Strand 2	G	69	74	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	88	94	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	102	105	first strand
Strand 2	G	111	115	anti-parallel
Strand 3	G	121	125	anti-parallel
Strand 4	G	135	139	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	151	first strand
Strand 2	G	156	161	anti-parallel
Strand 3	G	166	170	anti-parallel
Strand 4	G	175	180	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	187	192	first strand
Strand 2	G	198	203	anti-parallel
Strand 3	G	208	212	anti-parallel
Strand 4	G	218	222	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	229	234	first strand
Strand 2	G	240	245	anti-parallel
Strand 3	G	250	254	anti-parallel
Strand 4	G	259	264	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	273	278	first strand
Strand 2	G	284	289	anti-parallel
Strand 3	G	294	298	anti-parallel
Strand 4	G	304	308	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	51	first strand
Strand 2	H	336	339	anti-parallel
Strand 3	H	327	331	anti-parallel
Strand 4	H	315	320	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	63	first strand
Strand 2	H	69	74	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	88	94	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	102	105	first strand
Strand 2	H	111	115	anti-parallel
Strand 3	H	121	125	anti-parallel
Strand 4	H	137	139	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	151	first strand
Strand 2	H	156	161	anti-parallel
Strand 3	H	166	170	anti-parallel
Strand 4	H	178	180	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	187	192	first strand
Strand 2	H	198	203	anti-parallel
Strand 3	H	208	212	anti-parallel
Strand 4	H	217	222	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	229	234	first strand
Strand 2	H	240	245	anti-parallel
Strand 3	H	250	254	anti-parallel
Strand 4	H	259	264	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	273	278	first strand
Strand 2	H	284	289	anti-parallel
Strand 3	H	294	298	anti-parallel
Strand 4	H	304	308	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	47	51	first strand
Strand 2	K	336	339	anti-parallel
Strand 3	K	327	331	anti-parallel
Strand 4	K	315	320	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	58	63	first strand
Strand 2	K	69	74	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	88	94	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	102	105	first strand
Strand 2	K	111	115	anti-parallel
Strand 3	K	121	125	anti-parallel
Strand 4	K	137	139	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	146	151	first strand
Strand 2	K	156	161	anti-parallel
Strand 3	K	166	170	anti-parallel
Strand 4	K	175	180	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	187	192	first strand
Strand 2	K	198	203	anti-parallel
Strand 3	K	208	212	anti-parallel
Strand 4	K	218	222	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	229	234	first strand
Strand 2	K	240	245	anti-parallel
Strand 3	K	250	254	anti-parallel
Strand 4	K	259	264	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	273	278	first strand
Strand 2	K	284	289	anti-parallel
Strand 3	K	294	298	anti-parallel
Strand 4	K	304	308	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	254	first strand
Strand 2	A	266	272	anti-parallel
Strand 3	A	237	241	anti-parallel
Strand 4	A	209	218	anti-parallel
Strand 5	A	314	323	anti-parallel
Strand 6	A	290	298	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	253	254	first strand
Strand 2	O	266	272	anti-parallel
Strand 3	O	236	241	anti-parallel
Strand 4	O	209	219	anti-parallel
Strand 5	O	313	323	anti-parallel
Strand 6	O	290	298	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	253	254	first strand
Strand 2	P	266	272	anti-parallel
Strand 3	P	236	241	anti-parallel
Strand 4	P	209	217	anti-parallel
Strand 5	P	315	323	anti-parallel
Strand 6	P	290	298	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	254	first strand
Strand 2	B	266	272	anti-parallel
Strand 3	B	236	241	anti-parallel
Strand 4	B	210	218	anti-parallel
Strand 5	B	314	323	anti-parallel
Strand 6	B	290	299	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	253	254	first strand
Strand 2	M	266	272	anti-parallel
Strand 3	M	236	241	anti-parallel
Strand 4	M	209	219	anti-parallel
Strand 5	M	313	323	anti-parallel
Strand 6	M	290	299	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M8S

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M8S