Analysis of interatomic Contacts of Structural Units in PDB entry:
6M92


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M92 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 6M92 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 138LEU 547
B
 PRO 2ASN 139
C
 TYR 30ASP 32
C
 GLY 34ALA 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6M92. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 151Right-handed alpha
Helix 2
AA2
A
153 163Right-handed alpha
Helix 3
AA3
A
165 174Right-handed alpha
Helix 4
AA4
A
176 186Right-handed alpha
Helix 5
AA5
A
187 200Right-handed alpha
Helix 6
AA6
A
200 211Right-handed alpha
Helix 7
AA7
A
212 216Right-handed 310
Helix 8
AA8
A
228 253Right-handed alpha
Helix 9
AA9
A
497 502Right-handed alpha
Helix 10
AB1
A
506 509Right-handed 310
Helix 11
AB2
B
18 22Right-handed alpha
Helix 12
AB3
B
24 33Right-handed alpha
Helix 13
AB4
B
45 59Right-handed alpha
Helix 14
AB5
B
68 75Right-handed alpha
Helix 15
AB6
B
78 93Right-handed alpha
Helix 16
AB7
B
94 110Right-handed alpha
Helix 17
AB8
B
113 122Right-handed alpha
Helix 18
AB9
B
128 138Right-handed alpha
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There are 8 sheets in PDB entry 6M92. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 261first strand
Strand 2
A
540 545anti-parallel
Strand 3
A
531 536anti-parallel
Strand 4
A
522 527anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 275first strand
Strand 2
A
279 284anti-parallel
Strand 3
A
289 293anti-parallel
Strand 4
A
299 303anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 315first strand
Strand 2
A
319 324anti-parallel
Strand 3
A
328 333anti-parallel
Strand 4
A
339 344anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 356first strand
Strand 2
A
359 364anti-parallel
Strand 3
A
368 376anti-parallel
Strand 4
A
379 387anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 398first strand
Strand 2
A
402 407anti-parallel
Strand 3
A
412 416anti-parallel
Strand 4
A
422 426anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 439first strand
Strand 2
A
442 447anti-parallel
Strand 3
A
452 456anti-parallel
Strand 4
A
462 466anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 478first strand
Strand 2
A
482 487anti-parallel
Strand 3
A
491 496anti-parallel
Strand 4
A
511 516anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
3 7anti-parallel
Strand 3
B
39 40parallel
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