Analysis of interatomic Contacts of Structural Units in PDB entry:
6M96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M96 entry

There are 2 chains in PDB entry 6M96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LEU 237
B
 MET 1ALA 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 6M96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 26Right-handed alpha
Helix 2
AA2
A
59 69Right-handed alpha
Helix 3
AA3
A
87 94Right-handed alpha
Helix 4
AA4
A
99 111Right-handed alpha
Helix 5
AA5
A
114 130Right-handed alpha
Helix 6
AA6
A
131 137Right-handed 310
Helix 7
AA7
A
138 142Right-handed 310
Helix 8
AA8
A
143 158Right-handed alpha
Helix 9
AA9
A
166 172Right-handed 310
Helix 10
AB1
A
173 190Right-handed alpha
Helix 11
AB2
A
200 208Right-handed alpha
Helix 12
AB3
A
224 234Right-handed alpha
Helix 13
AB4
B
2 17Right-handed alpha
Helix 14
AB5
B
23 28Right-handed 310
Helix 15
AB6
B
29 48Right-handed alpha
Helix 16
AB7
B
53 83Right-handed alpha
Helix 17
AB8
B
83 93Right-handed alpha
Helix 18
AB9
B
100 130Right-handed alpha
Helix 19
AC1
B
132 138Right-handed 310
Helix 20
AC2
B
139 165Right-handed alpha
Helix 21
AC3
B
167 180Right-handed alpha
Helix 22
AC4
B
181 183Right-handed 310
Helix 23
AC5
B
188 192Right-handed 310
Helix 24
AC6
B
193 201Right-handed alpha
Helix 25
AC7
B
204 218Right-handed alpha
Helix 26
AC8
B
223 256Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6M96. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 44first strand
Strand 2
A
2 13anti-parallel
Strand 3
A
75 80anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
162 165parallel
Strand 3
A
193 197parallel
Strand 4
A
49 53parallel
Strand 5
A
210 215parallel
Strand 6
A
218 223anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il