Analysis of interatomic Contacts of Structural Units in PDB entry:
6M9K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M9K entry

There are 6 chains in PDB entry 6M9K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 226
B
 MET 1TRP 225
C
 MET 1ARG 226
D
 ILE 194ALA 260
E
 THR 195ALA 260
F
 THR 195GLN 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6M9K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
13 17Right-handed 310
Helix 3
AA3
A
21 29Right-handed alpha
Helix 4
AA4
A
36 42Right-handed alpha
Helix 5
AA5
A
51 68Right-handed alpha
Helix 6
AA6
A
74 97Right-handed alpha
Helix 7
AA7
A
135 144Right-handed alpha
Helix 8
AA8
A
151 166Right-handed alpha
Helix 9
AA9
A
192 217Right-handed alpha
Helix 10
AB1
A
222 226Right-handed 310
Helix 11
AB2
B
2 11Right-handed alpha
Helix 12
AB3
B
13 17Right-handed 310
Helix 13
AB4
B
21 29Right-handed alpha
Helix 14
AB5
B
36 41Right-handed alpha
Helix 15
AB6
B
51 68Right-handed alpha
Helix 16
AB7
B
74 97Right-handed alpha
Helix 17
AB8
B
135 144Right-handed alpha
Helix 18
AB9
B
151 166Right-handed alpha
Helix 19
AC1
B
192 217Right-handed alpha
Helix 20
AC2
C
2 11Right-handed alpha
Helix 21
AC3
C
13 17Right-handed 310
Helix 22
AC4
C
21 29Right-handed alpha
Helix 23
AC5
C
36 41Right-handed alpha
Helix 24
AC6
C
51 68Right-handed alpha
Helix 25
AC7
C
74 97Right-handed alpha
Helix 26
AC8
C
135 146Right-handed alpha
Helix 27
AC9
C
147 150Right-handed 310
Helix 28
AD1
C
151 166Right-handed alpha
Helix 29
AD2
C
192 217Right-handed alpha
Helix 30
AD3
C
222 226Right-handed 310
Helix 31
AD4
D
198 213Right-handed alpha
Helix 32
AD5
D
219 229Right-handed alpha
Helix 33
AD6
D
234 238Right-handed 310
Helix 34
AD7
D
239 258Right-handed alpha
Helix 35
AD8
E
198 212Right-handed alpha
Helix 36
AD9
E
219 229Right-handed alpha
Helix 37
AE1
E
234 238Right-handed 310
Helix 38
AE2
E
239 258Right-handed alpha
Helix 39
AE3
F
198 213Right-handed alpha
Helix 40
AE4
F
219 229Right-handed alpha
Helix 41
AE5
F
234 238Right-handed 310
Helix 42
AE6
F
239 256Right-handed alpha
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There are 6 sheets in PDB entry 6M9K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
114 116parallel
Strand 3
A
106 107anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
120 122anti-parallel
Strand 3
A
127 131anti-parallel
Strand 4
A
169 175parallel
Strand 5
A
184 190anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 101first strand
Strand 2
B
120 122anti-parallel
Strand 3
B
127 131anti-parallel
Strand 4
B
169 175parallel
Strand 5
B
184 190anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
115 116anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 33first strand
Strand 2
C
114 116parallel
Strand 3
C
106 107anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
C
120 122anti-parallel
Strand 3
C
127 131anti-parallel
Strand 4
C
169 175parallel
Strand 5
C
184 190anti-parallel
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