Analysis of interatomic Contacts of Structural Units in PDB entry:
6M9S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M9S entry

There are 3 chains in PDB entry 6M9S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 3	LEU 471
B	HIS 3	LEU 471
C	HIS 3	ALA 322

There are 98 helices in PDB entry 6M9S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	26	Right-handed alpha
Helix 2	AA2	A	27	31	Right-handed 310
Helix 3	AA3	A	48	55	Right-handed 310
Helix 4	AA4	A	62	66	Right-handed 310
Helix 5	AA5	A	68	84	Right-handed alpha
Helix 6	AA6	A	97	105	Right-handed alpha
Helix 7	AA7	A	106	126	Right-handed alpha
Helix 8	AA8	A	127	132	Right-handed alpha
Helix 9	AA9	A	139	149	Right-handed alpha
Helix 10	AB1	A	159	167	Right-handed alpha
Helix 11	AB2	A	170	182	Right-handed alpha
Helix 12	AB3	A	182	188	Right-handed alpha
Helix 13	AB4	A	190	195	Right-handed alpha
Helix 14	AB5	A	202	216	Right-handed alpha
Helix 15	AB6	A	217	220	Right-handed 310
Helix 16	AB7	A	224	236	Right-handed alpha
Helix 17	AB8	A	245	249	Right-handed 310
Helix 18	AB9	A	250	266	Right-handed alpha
Helix 19	AC1	A	269	300	Right-handed alpha
Helix 20	AC2	A	305	311	Right-handed alpha
Helix 21	AC3	A	322	326	Right-handed alpha
Helix 22	AC4	A	326	335	Right-handed alpha
Helix 23	AC5	A	338	369	Right-handed alpha
Helix 24	AC6	A	369	386	Right-handed alpha
Helix 25	AC7	A	466	471	Right-handed 310
Helix 26	AC8	B	13	26	Right-handed alpha
Helix 27	AC9	B	27	31	Right-handed 310
Helix 28	AD1	B	48	55	Right-handed 310
Helix 29	AD2	B	62	66	Right-handed 310
Helix 30	AD3	B	68	84	Right-handed alpha
Helix 31	AD4	B	97	105	Right-handed alpha
Helix 32	AD5	B	106	126	Right-handed alpha
Helix 33	AD6	B	127	132	Right-handed alpha
Helix 34	AD7	B	139	149	Right-handed alpha
Helix 35	AD8	B	159	167	Right-handed alpha
Helix 36	AD9	B	170	182	Right-handed alpha
Helix 37	AE1	B	182	188	Right-handed alpha
Helix 38	AE2	B	190	195	Right-handed alpha
Helix 39	AE3	B	202	214	Right-handed alpha
Helix 40	AE4	B	224	236	Right-handed alpha
Helix 41	AE5	B	245	249	Right-handed 310
Helix 42	AE6	B	250	266	Right-handed alpha
Helix 43	AE7	B	269	300	Right-handed alpha
Helix 44	AE8	B	305	311	Right-handed alpha
Helix 45	AE9	B	320	326	Right-handed alpha
Helix 46	AF1	B	326	335	Right-handed alpha
Helix 47	AF2	B	338	369	Right-handed alpha
Helix 48	AF3	B	369	386	Right-handed alpha
Helix 49	AF4	B	466	471	Right-handed 310
Helix 50	AF5	C	13	26	Right-handed alpha
Helix 51	AF6	C	27	31	Right-handed 310
Helix 52	AF7	C	48	55	Right-handed 310
Helix 53	AF8	C	62	66	Right-handed 310
Helix 54	AF9	C	68	84	Right-handed alpha
Helix 55	AG1	C	97	105	Right-handed alpha
Helix 56	AG2	C	106	126	Right-handed alpha
Helix 57	AG3	C	127	132	Right-handed alpha
Helix 58	AG4	C	139	149	Right-handed alpha
Helix 59	AG5	C	159	167	Right-handed alpha
Helix 60	AG6	C	170	182	Right-handed alpha
Helix 61	AG7	C	182	188	Right-handed alpha
Helix 62	AG8	C	190	195	Right-handed alpha
Helix 63	AG9	C	202	216	Right-handed alpha
Helix 64	AH1	C	217	220	Right-handed 310
Helix 65	AH2	C	224	236	Right-handed alpha
Helix 66	AH3	C	245	249	Right-handed 310
Helix 67	AH4	C	250	266	Right-handed alpha
Helix 68	AH5	C	269	300	Right-handed alpha
Helix 69	AH6	C	305	311	Right-handed alpha
Helix 70	AH7	C	320	326	Right-handed alpha
Helix 71	AH8	C	326	335	Right-handed alpha
Helix 72	AH9	C	338	369	Right-handed alpha
Helix 73	AI1	C	369	386	Right-handed alpha
Helix 74	AI2	C	466	471	Right-handed 310
Helix 75	AI3	D	13	26	Right-handed alpha
Helix 76	AI4	D	27	31	Right-handed 310
Helix 77	AI5	D	48	55	Right-handed 310
Helix 78	AI6	D	62	66	Right-handed 310
Helix 79	AI7	D	68	84	Right-handed alpha
Helix 80	AI8	D	97	105	Right-handed alpha
Helix 81	AI9	D	106	126	Right-handed alpha
Helix 82	AJ1	D	127	132	Right-handed alpha
Helix 83	AJ2	D	139	151	Right-handed alpha
Helix 84	AJ3	D	159	167	Right-handed alpha
Helix 85	AJ4	D	170	181	Right-handed alpha
Helix 86	AJ5	D	182	188	Right-handed alpha
Helix 87	AJ6	D	190	195	Right-handed alpha
Helix 88	AJ7	D	202	215	Right-handed alpha
Helix 89	AJ8	D	224	236	Right-handed alpha
Helix 90	AJ9	D	245	249	Right-handed 310
Helix 91	AK1	D	250	266	Right-handed alpha
Helix 92	AK2	D	269	300	Right-handed alpha
Helix 93	AK3	D	305	311	Right-handed alpha
Helix 94	AK4	D	320	326	Right-handed alpha
Helix 95	AK5	D	326	335	Right-handed alpha
Helix 96	AK6	D	338	369	Right-handed alpha
Helix 97	AK7	D	369	386	Right-handed alpha
Helix 98	AK8	D	466	471	Right-handed 310

There are 12 sheets in PDB entry 6M9S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	B	199	200	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	200	first strand
Strand 2	B	87	88	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	399	first strand
Strand 2	A	456	465	anti-parallel
Strand 3	A	412	419	anti-parallel
Strand 4	A	439	442	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	407	first strand
Strand 2	A	448	452	anti-parallel
Strand 3	A	422	427	anti-parallel
Strand 4	A	430	434	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	399	first strand
Strand 2	B	456	465	anti-parallel
Strand 3	B	412	419	anti-parallel
Strand 4	B	439	442	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	448	452	anti-parallel
Strand 3	B	422	427	anti-parallel
Strand 4	B	430	434	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	D	199	200	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	200	first strand
Strand 2	D	87	88	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	399	first strand
Strand 2	C	456	465	anti-parallel
Strand 3	C	412	419	anti-parallel
Strand 4	C	439	442	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	407	first strand
Strand 2	C	448	452	anti-parallel
Strand 3	C	422	427	anti-parallel
Strand 4	C	430	434	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	399	first strand
Strand 2	D	456	465	anti-parallel
Strand 3	D	412	419	anti-parallel
Strand 4	D	439	442	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	407	first strand
Strand 2	D	448	452	anti-parallel
Strand 3	D	422	427	anti-parallel
Strand 4	D	430	434	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M9S

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M9S