Analysis of interatomic Contacts of Structural Units in PDB entry:
6M9U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M9U entry

There are 2 chains in PDB entry 6M9U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 17PHE 294
B
 THR 12VAL 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6M9U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 28Right-handed 310
Helix 2
AA2
A
32 38Right-handed 310
Helix 3
AA3
A
51 64Right-handed alpha
Helix 4
AA4
A
73 75Right-handed 310
Helix 5
AA5
A
76 92Right-handed alpha
Helix 6
AA6
A
104 120Right-handed alpha
Helix 7
AA7
A
142 171Right-handed alpha
Helix 8
AA8
A
198 219Right-handed alpha
Helix 9
AA9
A
244 252Right-handed alpha
Helix 10
AB1
A
261 274Right-handed alpha
Helix 11
AB2
A
275 278Right-handed 310
Helix 12
AB3
A
290 294Right-handed 310
Helix 13
AB4
B
16 21Right-handed alpha
Helix 14
AB5
B
24 28Right-handed 310
Helix 15
AB6
B
33 38Right-handed 310
Helix 16
AB7
B
51 64Right-handed alpha
Helix 17
AB8
B
73 75Right-handed 310
Helix 18
AB9
B
76 92Right-handed alpha
Helix 19
AC1
B
104 120Right-handed alpha
Helix 20
AC2
B
143 170Right-handed alpha
Helix 21
AC3
B
198 219Right-handed alpha
Helix 22
AC4
B
248 254Right-handed alpha
Helix 23
AC5
B
261 274Right-handed alpha
Helix 24
AC6
B
275 278Right-handed 310
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There are 2 sheets in PDB entry 6M9U. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
67 72parallel
Strand 3
A
43 46parallel
Strand 4
A
124 131parallel
Strand 5
A
174 182parallel
Strand 6
A
223 230parallel
Strand 7
A
284 287parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 99first strand
Strand 2
B
67 72parallel
Strand 3
B
43 46parallel
Strand 4
B
124 130parallel
Strand 5
B
174 181parallel
Strand 6
B
223 230parallel
Strand 7
B
284 287parallel
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