Analysis of interatomic Contacts of Structural Units in PDB entry:
6M9X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M9X entry

There are 8 chains in PDB entry 6M9X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	LEU 57
A	TYR 61	MET 219
B	PRO 2	LEU 57
B	TYR 61	MET 219
C	PRO 2	LEU 57
C	TYR 61	MET 219
D	PRO 2	LEU 57
D	TYR 61	MET 219

There are 16 helices in PDB entry 6M9X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	57	Right-handed 310
Helix 2	AA2	A	61	65	Right-handed 310
Helix 3	AA3	A	72	80	Right-handed alpha
Helix 4	AA4	A	182	187	Right-handed alpha
Helix 5	AA5	B	49	57	Right-handed 310
Helix 6	AA6	B	61	65	Right-handed 310
Helix 7	AA7	B	72	80	Right-handed alpha
Helix 8	AA8	B	182	187	Right-handed alpha
Helix 9	AA9	C	49	57	Right-handed 310
Helix 10	AB1	C	61	64	Right-handed 310
Helix 11	AB2	C	72	80	Right-handed alpha
Helix 12	AB3	C	182	188	Right-handed alpha
Helix 13	AB4	D	49	57	Right-handed 310
Helix 14	AB5	D	61	64	Right-handed 310
Helix 15	AB6	D	72	80	Right-handed alpha
Helix 16	AB7	D	182	187	Right-handed alpha

There are 6 sheets in PDB entry 6M9X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	136	first strand
Strand 2	A	150	161	anti-parallel
Strand 3	A	167	177	anti-parallel
Strand 4	A	84	92	anti-parallel
Strand 5	A	97	107	anti-parallel
Strand 6	A	110	120	anti-parallel
Strand 7	A	6	15	parallel
Strand 8	A	18	29	anti-parallel
Strand 9	A	34	40	anti-parallel
Strand 10	A	205	215	anti-parallel
Strand 11	A	191	201	anti-parallel
Strand 12	A	139	147	anti-parallel
Strand 13	A	150	161	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	136	first strand
Strand 2	B	150	161	anti-parallel
Strand 3	B	167	177	anti-parallel
Strand 4	B	84	92	anti-parallel
Strand 5	B	97	107	anti-parallel
Strand 6	B	110	120	anti-parallel
Strand 7	B	6	15	parallel
Strand 8	B	18	29	anti-parallel
Strand 9	B	34	40	anti-parallel
Strand 10	B	205	215	anti-parallel
Strand 11	B	191	201	anti-parallel
Strand 12	B	139	147	anti-parallel
Strand 13	B	150	161	anti-parallel

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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	136	first strand
Strand 2	C	150	161	anti-parallel
Strand 3	C	167	177	anti-parallel
Strand 4	C	84	92	anti-parallel
Strand 5	C	97	107	anti-parallel
Strand 6	C	110	120	anti-parallel
Strand 7	C	6	15	parallel
Strand 8	C	18	29	anti-parallel
Strand 9	C	34	41	anti-parallel
Strand 10	C	205	215	anti-parallel
Strand 11	C	191	201	anti-parallel
Strand 12	C	139	147	anti-parallel
Strand 13	C	150	161	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	70	71	anti-parallel

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There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	136	first strand
Strand 2	D	150	161	anti-parallel
Strand 3	D	167	177	anti-parallel
Strand 4	D	84	92	anti-parallel
Strand 5	D	97	107	anti-parallel
Strand 6	D	110	120	anti-parallel
Strand 7	D	6	15	parallel
Strand 8	D	18	29	anti-parallel
Strand 9	D	34	41	anti-parallel
Strand 10	D	205	215	anti-parallel
Strand 11	D	191	201	anti-parallel
Strand 12	D	139	147	anti-parallel
Strand 13	D	150	161	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	70	71	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M9X

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M9X