Analysis of interatomic Contacts of Structural Units in PDB entry:
6M9Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M9Z entry

There are 2 chains in PDB entry 6M9Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2MET 219
D
 PRO 2MET 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6M9Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 57Right-handed 310
Helix 2
AA2
A
61 64Right-handed 310
Helix 3
AA3
A
72 80Right-handed alpha
Helix 4
AA4
A
182 187Right-handed alpha
Helix 5
AA5
D
49 57Right-handed 310
Helix 6
AA6
D
61 64Right-handed 310
Helix 7
AA7
D
72 80Right-handed alpha
Helix 8
AA8
D
182 187Right-handed alpha
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There are 4 sheets in PDB entry 6M9Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
150 161anti-parallel
Strand 3
A
166 177anti-parallel
Strand 4
A
84 92anti-parallel
Strand 5
A
97 107anti-parallel
Strand 6
A
110 120anti-parallel
Strand 7
A
6 15parallel
Strand 8
A
18 29anti-parallel
Strand 9
A
34 41anti-parallel
Strand 10
A
206 216anti-parallel
Strand 11
A
191 203anti-parallel
Strand 12
A
139 147anti-parallel
Strand 13
A
150 161anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
70 71anti-parallel
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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 136first strand
Strand 2
D
150 161anti-parallel
Strand 3
D
166 177anti-parallel
Strand 4
D
84 92anti-parallel
Strand 5
D
97 107anti-parallel
Strand 6
D
110 120anti-parallel
Strand 7
D
6 15parallel
Strand 8
D
18 29anti-parallel
Strand 9
D
34 41anti-parallel
Strand 10
D
206 216anti-parallel
Strand 11
D
191 200anti-parallel
Strand 12
D
139 147anti-parallel
Strand 13
D
150 161anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 67first strand
Strand 2
D
70 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il