Analysis of interatomic Contacts of Structural Units in PDB entry:
6MAF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MAF entry

There are 4 chains in PDB entry 6MAF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 6	TYR 264
B	PHE 6	TYR 264
C	ASN 6	PHE 282
D	ASN 6	PHE 282

There are 41 helices in PDB entry 6MAF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	22	Right-handed alpha
Helix 2	AA2	A	23	33	Right-handed alpha
Helix 3	AA3	A	33	48	Right-handed alpha
Helix 4	AA4	A	55	77	Right-handed alpha
Helix 5	AA5	A	88	92	Right-handed 310
Helix 6	AA6	A	122	130	Right-handed alpha
Helix 7	AA7	A	173	191	Right-handed alpha
Helix 8	AA8	A	227	233	Right-handed alpha
Helix 9	AA9	A	242	248	Right-handed alpha
Helix 10	AB1	A	250	261	Right-handed alpha
Helix 11	AB2	B	9	22	Right-handed alpha
Helix 12	AB3	B	23	33	Right-handed alpha
Helix 13	AB4	B	33	48	Right-handed alpha
Helix 14	AB5	B	55	77	Right-handed alpha
Helix 15	AB6	B	122	130	Right-handed alpha
Helix 16	AB7	B	173	191	Right-handed alpha
Helix 17	AB8	B	227	233	Right-handed alpha
Helix 18	AB9	B	242	248	Right-handed alpha
Helix 19	AC1	B	250	261	Right-handed alpha
Helix 20	AC2	C	10	23	Right-handed alpha
Helix 21	AC3	C	23	33	Right-handed alpha
Helix 22	AC4	C	34	49	Right-handed alpha
Helix 23	AC5	C	53	79	Right-handed alpha
Helix 24	AC6	C	88	99	Right-handed alpha
Helix 25	AC7	C	101	107	Right-handed alpha
Helix 26	AC8	C	128	135	Right-handed alpha
Helix 27	AC9	C	184	201	Right-handed alpha
Helix 28	AD1	C	237	241	Right-handed 310
Helix 29	AD2	C	250	267	Right-handed alpha
Helix 30	AD3	C	271	279	Right-handed alpha
Helix 31	AD4	D	10	23	Right-handed alpha
Helix 32	AD5	D	23	33	Right-handed alpha
Helix 33	AD6	D	34	49	Right-handed alpha
Helix 34	AD7	D	53	79	Right-handed alpha
Helix 35	AD8	D	88	99	Right-handed alpha
Helix 36	AD9	D	101	107	Right-handed alpha
Helix 37	AE1	D	128	135	Right-handed alpha
Helix 38	AE2	D	184	201	Right-handed alpha
Helix 39	AE3	D	237	241	Right-handed 310
Helix 40	AE4	D	250	267	Right-handed alpha
Helix 41	AE5	D	271	279	Right-handed alpha

There are 7 sheets in PDB entry 6MAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	118	first strand
Strand 2	A	132	136	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	146	first strand
Strand 2	A	161	172	anti-parallel
Strand 3	A	195	203	parallel
Strand 4	A	218	221	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	157	first strand
Strand 2	A	150	152	anti-parallel
Strand 3	B	150	152	anti-parallel
Strand 4	B	155	157	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	118	first strand
Strand 2	B	132	136	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	146	first strand
Strand 2	B	161	172	anti-parallel
Strand 3	B	195	203	parallel
Strand 4	B	218	221	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	235	first strand
Strand 2	C	205	214	parallel
Strand 3	C	165	183	parallel
Strand 4	C	112	124	parallel
Strand 5	C	138	158	anti-parallel
Strand 6	D	138	157	anti-parallel
Strand 7	D	112	124	anti-parallel
Strand 8	D	165	183	parallel
Strand 9	D	205	214	parallel
Strand 10	D	227	235	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	235	first strand
Strand 2	C	205	214	parallel
Strand 3	C	165	183	parallel
Strand 4	C	138	158	anti-parallel
Strand 5	D	138	157	anti-parallel
Strand 6	D	165	183	anti-parallel
Strand 7	D	205	214	parallel
Strand 8	D	227	235	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MAF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MAF