Analysis of interatomic Contacts of Structural Units in PDB entry:
6MAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MAK entry

There are 3 chains in PDB entry 6MAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 336HIS 431
A
 THR 433PRO 607
B
 GLY 38ASP 64
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6MAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
356 361Right-handed alpha
Helix 2
AA2
A
377 388Right-handed alpha
Helix 3
AA3
A
414 426Right-handed alpha
Helix 4
AA4
A
479 482Right-handed 310
Helix 5
AA5
A
485 502Right-handed alpha
Helix 6
AA6
A
512 534Right-handed alpha
Helix 7
AA7
A
540 549Right-handed alpha
Helix 8
AA8
A
551 562Right-handed alpha
Helix 9
AA9
A
577 588Right-handed alpha
Helix 10
AB1
A
599 603Right-handed 310
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There are 5 sheets in PDB entry 6MAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 348first strand
Strand 2
A
339 342anti-parallel
Strand 3
A
364 367parallel
Strand 4
A
374 375anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 401first strand
Strand 2
A
404 410anti-parallel
Strand 3
A
441 450anti-parallel
Strand 4
A
453 463anti-parallel
Strand 5
A
475 477anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 472first strand
Strand 2
A
506 507parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
B
57 60anti-parallel
Strand 3
A
571 575parallel
Strand 4
A
565 568anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
47 50anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il