Analysis of interatomic Contacts of Structural Units in PDB entry:
6MAR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MAR entry

There are 10 chains in PDB entry 6MAR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	VAL 2	ALA 114
N	ILE 2	ARG 108
H	ARG 1	SER 113
L	ASP 1	THR 109
A	GLU 32	VAL 505
B	ALA 512	ASP 664
D	ALA 512	ASP 664
C	GLU 32	VAL 505
E	GLU 32	VAL 505
F	GLY 521	ASP 664

There are 48 helices in PDB entry 6MAR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	28	32	Right-handed 310
Helix 2	AA2	M	83	87	Right-handed 310
Helix 3	AA3	N	79	83	Right-handed 310
Helix 4	AA4	H	83	87	Right-handed 310
Helix 5	AA5	A	98	116	Right-handed alpha
Helix 6	AA6	A	122	126	Right-handed 310
Helix 7	AA7	A	139	143	Right-handed 310
Helix 8	AA8	A	177	179	Right-handed 310
Helix 9	AA9	A	335	350	Right-handed alpha
Helix 10	AB1	A	368	373	Right-handed alpha
Helix 11	AB2	A	377	381	Right-handed 310
Helix 12	AB3	A	474	483	Right-handed alpha
Helix 13	AB4	B	523	528	Right-handed 310
Helix 14	AB5	B	529	534	Right-handed alpha
Helix 15	AB6	B	537	543	Right-handed alpha
Helix 16	AB7	B	570	596	Right-handed alpha
Helix 17	AB8	B	627	636	Right-handed alpha
Helix 18	AB9	B	638	652	Right-handed alpha
Helix 19	AC1	B	655	662	Right-handed alpha
Helix 20	AC2	D	529	534	Right-handed alpha
Helix 21	AC3	D	536	543	Right-handed alpha
Helix 22	AC4	D	559	565	Right-handed alpha
Helix 23	AC5	D	569	596	Right-handed alpha
Helix 24	AC6	D	618	623	Right-handed alpha
Helix 25	AC7	D	627	636	Right-handed alpha
Helix 26	AC8	D	638	650	Right-handed alpha
Helix 27	AC9	D	655	661	Right-handed alpha
Helix 28	AD1	C	67	71	Right-handed 310
Helix 29	AD2	C	99	116	Right-handed alpha
Helix 30	AD3	C	122	127	Right-handed 310
Helix 31	AD4	C	335	350	Right-handed alpha
Helix 32	AD5	C	377	381	Right-handed 310
Helix 33	AD6	C	475	481	Right-handed alpha
Helix 34	AD7	E	99	116	Right-handed alpha
Helix 35	AD8	E	123	127	Right-handed 310
Helix 36	AD9	E	139	143	Right-handed 310
Helix 37	AE1	E	195	198	Right-handed 310
Helix 38	AE2	E	335	350	Right-handed alpha
Helix 39	AE3	E	368	373	Right-handed alpha
Helix 40	AE4	E	377	381	Right-handed 310
Helix 41	AE5	E	387	392	Right-handed 310
Helix 42	AE6	E	475	484	Right-handed alpha
Helix 43	AE7	F	536	544	Right-handed alpha
Helix 44	AE8	F	570	596	Right-handed alpha
Helix 45	AE9	F	618	625	Right-handed alpha
Helix 46	AF1	F	627	636	Right-handed alpha
Helix 47	AF2	F	638	652	Right-handed alpha
Helix 48	AF3	F	655	663	Right-handed alpha

There are 40 sheets in PDB entry 6MAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	107	111	parallel
Strand 3	M	88	91	anti-parallel
Strand 4	M	34	39	anti-parallel
Strand 5	M	45	51	anti-parallel
Strand 6	M	57	58	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	20	23	first strand
Strand 2	M	77	81	anti-parallel
Strand 3	M	68	72	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	94	95	first strand
Strand 2	M	100	102	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	100	100	first strand
Strand 2	B	515	516	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	5	7	first strand
Strand 2	N	22	24	anti-parallel
Strand 3	N	70	74	anti-parallel
Strand 4	N	63	66	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	104	105	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	54	first strand
Strand 2	N	45	49	anti-parallel
Strand 3	N	33	38	anti-parallel
Strand 4	N	85	90	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	35	39	anti-parallel
Strand 5	H	45	50	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	22	first strand
Strand 2	H	77	82	anti-parallel
Strand 3	H	67	72	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	100	first strand
Strand 2	D	513	514	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	21	24	first strand
Strand 2	L	70	73	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	50	anti-parallel
Strand 3	L	34	38	anti-parallel
Strand 4	L	84	89	anti-parallel
Strand 5	L	102	104	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	45	first strand
Strand 2	A	487	499	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	93	first strand
Strand 2	A	237	239	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	155	161	anti-parallel
Strand 3	A	170	176	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	191	193	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	434	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	449	454	anti-parallel
Strand 3	A	284	287	anti-parallel
Strand 4	A	271	274	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	385	first strand
Strand 2	A	414	420	anti-parallel
Strand 3	A	330	333	anti-parallel
Strand 4	A	294	302	anti-parallel
Strand 5	A	441	447	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	312	first strand
Strand 2	A	315	317	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	359	361	anti-parallel
Strand 3	A	466	468	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	604	609	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	495	499	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	85	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	215	218	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	236	239	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	176	first strand
Strand 2	C	155	161	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	434	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	451	456	anti-parallel
Strand 3	C	284	287	anti-parallel
Strand 4	C	271	273	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	451	456	anti-parallel
Strand 3	C	466	470	anti-parallel
Strand 4	C	359	361	parallel
Strand 5	C	393	395	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	385	first strand
Strand 2	C	414	420	anti-parallel
Strand 3	C	330	333	anti-parallel
Strand 4	C	294	297	anti-parallel
Strand 5	C	444	447	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	312	first strand
Strand 2	C	315	317	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	40	first strand
Strand 2	E	494	499	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	83	85	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	238	239	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	121	first strand
Strand 2	E	202	203	anti-parallel
Strand 3	E	434	435	parallel
Strand 4	E	423	424	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	177	first strand
Strand 2	E	154	162	anti-parallel
Strand 3	E	129	133	anti-parallel
Strand 4	E	190	193	anti-parallel
Strand 5	E	181	183	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	287	anti-parallel
Strand 3	E	451	456	anti-parallel
Strand 4	E	466	469	anti-parallel
Strand 5	E	359	361	parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	376	first strand
Strand 2	E	383	385	anti-parallel
Strand 3	E	413	420	anti-parallel
Strand 4	E	330	334	anti-parallel
Strand 5	E	294	298	anti-parallel
Strand 6	E	443	447	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	307	312	first strand
Strand 2	E	315	317	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MAR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MAR