Analysis of interatomic Contacts of Structural Units in PDB entry:
6MB2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MB2 entry

There are 45 chains in PDB entry 6MB2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	LYS 93
B	ALA 0	LYS 93
C	ALA 0	LYS 93
D	ALA 0	LYS 93
E	ALA 0	LYS 93
F	ALA 0	LYS 93
G	ALA 0	LYS 93
H	ALA 0	LYS 93
I	ALA 0	LYS 93
J	ALA 0	LYS 93
K	ALA 0	LYS 93
L	ALA 0	LYS 93
M	ALA 0	LYS 93
N	ALA 0	LYS 93
O	ALA 0	LYS 93
a	SER 2	PHE 64
a	VAL 68	ILE 229
b	SER 2	PHE 64
b	VAL 68	ILE 229
c	SER 2	PHE 64
c	VAL 68	ILE 229
d	SER 2	PHE 64
d	VAL 68	ILE 229
e	SER 2	PHE 64
e	VAL 68	ILE 229
f	SER 2	PHE 64
f	VAL 68	ILE 229
g	SER 2	PHE 64
g	VAL 68	ILE 229
h	SER 2	PHE 64
h	VAL 68	ILE 229
i	SER 2	PHE 64
i	VAL 68	ILE 229
j	SER 2	PHE 64
j	VAL 68	ILE 229
k	SER 2	PHE 64
k	VAL 68	ILE 229
l	SER 2	PHE 64
l	VAL 68	ILE 229
m	SER 2	PHE 64
m	VAL 68	ILE 229
n	SER 2	PHE 64
n	VAL 68	ILE 229
o	SER 2	PHE 64
o	VAL 68	ILE 229

There are150 helices in PDB entry 6MB2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	12	Right-handed alpha
Helix 2	AA2	A	19	28	Right-handed alpha
Helix 3	AA3	A	44	56	Right-handed alpha
Helix 4	AA4	A	59	72	Right-handed alpha
Helix 5	AA5	A	75	92	Right-handed alpha
Helix 6	AA6	B	1	12	Right-handed alpha
Helix 7	AA7	B	19	28	Right-handed alpha
Helix 8	AA8	B	44	56	Right-handed alpha
Helix 9	AA9	B	59	72	Right-handed alpha
Helix 10	AB1	B	75	92	Right-handed alpha
Helix 11	AB2	C	1	12	Right-handed alpha
Helix 12	AB3	C	19	28	Right-handed alpha
Helix 13	AB4	C	44	56	Right-handed alpha
Helix 14	AB5	C	59	72	Right-handed alpha
Helix 15	AB6	C	75	92	Right-handed alpha
Helix 16	AB7	D	1	12	Right-handed alpha
Helix 17	AB8	D	19	28	Right-handed alpha
Helix 18	AB9	D	44	56	Right-handed alpha
Helix 19	AC1	D	59	72	Right-handed alpha
Helix 20	AC2	D	75	92	Right-handed alpha
Helix 21	AC3	E	1	12	Right-handed alpha
Helix 22	AC4	E	19	28	Right-handed alpha
Helix 23	AC5	E	44	56	Right-handed alpha
Helix 24	AC6	E	59	72	Right-handed alpha
Helix 25	AC7	E	75	92	Right-handed alpha
Helix 26	AC8	F	1	12	Right-handed alpha
Helix 27	AC9	F	19	28	Right-handed alpha
Helix 28	AD1	F	44	56	Right-handed alpha
Helix 29	AD2	F	59	72	Right-handed alpha
Helix 30	AD3	F	75	92	Right-handed alpha
Helix 31	AD4	G	1	12	Right-handed alpha
Helix 32	AD5	G	19	28	Right-handed alpha
Helix 33	AD6	G	44	56	Right-handed alpha
Helix 34	AD7	G	59	72	Right-handed alpha
Helix 35	AD8	G	75	92	Right-handed alpha
Helix 36	AD9	H	1	12	Right-handed alpha
Helix 37	AE1	H	19	28	Right-handed alpha
Helix 38	AE2	H	44	56	Right-handed alpha
Helix 39	AE3	H	59	72	Right-handed alpha
Helix 40	AE4	H	75	92	Right-handed alpha
Helix 41	AE5	I	1	12	Right-handed alpha
Helix 42	AE6	I	19	28	Right-handed alpha
Helix 43	AE7	I	44	56	Right-handed alpha
Helix 44	AE8	I	59	72	Right-handed alpha
Helix 45	AE9	I	75	92	Right-handed alpha
Helix 46	AF1	J	1	12	Right-handed alpha
Helix 47	AF2	J	19	28	Right-handed alpha
Helix 48	AF3	J	44	56	Right-handed alpha
Helix 49	AF4	J	59	72	Right-handed alpha
Helix 50	AF5	J	75	92	Right-handed alpha
Helix 51	AF6	K	1	12	Right-handed alpha
Helix 52	AF7	K	19	28	Right-handed alpha
Helix 53	AF8	K	44	56	Right-handed alpha
Helix 54	AF9	K	59	72	Right-handed alpha
Helix 55	AG1	K	75	92	Right-handed alpha
Helix 56	AG2	L	1	12	Right-handed alpha
Helix 57	AG3	L	19	28	Right-handed alpha
Helix 58	AG4	L	44	56	Right-handed alpha
Helix 59	AG5	L	59	72	Right-handed alpha
Helix 60	AG6	L	75	92	Right-handed alpha
Helix 61	AG7	M	1	12	Right-handed alpha
Helix 62	AG8	M	19	28	Right-handed alpha
Helix 63	AG9	M	44	56	Right-handed alpha
Helix 64	AH1	M	59	72	Right-handed alpha
Helix 65	AH2	M	75	92	Right-handed alpha
Helix 66	AH3	N	1	12	Right-handed alpha
Helix 67	AH4	N	19	28	Right-handed alpha
Helix 68	AH5	N	44	56	Right-handed alpha
Helix 69	AH6	N	59	72	Right-handed alpha
Helix 70	AH7	N	75	92	Right-handed alpha
Helix 71	AH8	O	1	12	Right-handed alpha
Helix 72	AH9	O	19	28	Right-handed alpha
Helix 73	AI1	O	44	56	Right-handed alpha
Helix 74	AI2	O	59	72	Right-handed alpha
Helix 75	AI3	O	75	92	Right-handed alpha
Helix 76	AI4	a	3	9	Right-handed 310
Helix 77	AI5	a	56	61	Right-handed alpha
Helix 78	AI6	a	68	72	Right-handed 310
Helix 79	AI7	a	75	81	Right-handed 310
Helix 80	AI8	a	82	87	Right-handed alpha
Helix 81	AI9	b	3	9	Right-handed 310
Helix 82	AJ1	b	56	61	Right-handed alpha
Helix 83	AJ2	b	68	72	Right-handed 310
Helix 84	AJ3	b	75	81	Right-handed 310
Helix 85	AJ4	b	82	87	Right-handed alpha
Helix 86	AJ5	c	3	9	Right-handed 310
Helix 87	AJ6	c	56	61	Right-handed alpha
Helix 88	AJ7	c	68	72	Right-handed 310
Helix 89	AJ8	c	75	81	Right-handed 310
Helix 90	AJ9	c	82	87	Right-handed alpha
Helix 91	AK1	d	3	9	Right-handed 310
Helix 92	AK2	d	56	61	Right-handed alpha
Helix 93	AK3	d	68	72	Right-handed 310
Helix 94	AK4	d	75	81	Right-handed 310
Helix 95	AK5	d	82	87	Right-handed alpha
Helix 96	AK6	e	3	9	Right-handed 310
Helix 97	AK7	e	56	61	Right-handed alpha
Helix 98	AK8	e	68	72	Right-handed 310
Helix 99	AK9	e	75	81	Right-handed 310
Helix 100	AL1	e	82	87	Right-handed alpha
Helix 101	AL2	f	3	9	Right-handed 310
Helix 102	AL3	f	56	61	Right-handed alpha
Helix 103	AL4	f	68	72	Right-handed 310
Helix 104	AL5	f	75	81	Right-handed 310
Helix 105	AL6	f	82	87	Right-handed alpha
Helix 106	AL7	g	3	9	Right-handed 310
Helix 107	AL8	g	56	61	Right-handed alpha
Helix 108	AL9	g	68	72	Right-handed 310
Helix 109	AM1	g	75	81	Right-handed 310
Helix 110	AM2	g	82	87	Right-handed alpha
Helix 111	AM3	h	3	9	Right-handed 310
Helix 112	AM4	h	56	61	Right-handed alpha
Helix 113	AM5	h	68	72	Right-handed 310
Helix 114	AM6	h	75	81	Right-handed 310
Helix 115	AM7	h	82	87	Right-handed alpha
Helix 116	AM8	i	3	9	Right-handed 310
Helix 117	AM9	i	56	61	Right-handed alpha
Helix 118	AN1	i	68	72	Right-handed 310
Helix 119	AN2	i	75	81	Right-handed 310
Helix 120	AN3	i	82	87	Right-handed alpha
Helix 121	AN4	j	3	9	Right-handed 310
Helix 122	AN5	j	56	61	Right-handed alpha
Helix 123	AN6	j	68	72	Right-handed 310
Helix 124	AN7	j	75	81	Right-handed 310
Helix 125	AN8	j	82	87	Right-handed alpha
Helix 126	AN9	k	3	9	Right-handed 310
Helix 127	AO1	k	56	61	Right-handed alpha
Helix 128	AO2	k	68	72	Right-handed 310
Helix 129	AO3	k	75	81	Right-handed 310
Helix 130	AO4	k	82	87	Right-handed alpha
Helix 131	AO5	l	3	9	Right-handed 310
Helix 132	AO6	l	56	61	Right-handed alpha
Helix 133	AO7	l	68	72	Right-handed 310
Helix 134	AO8	l	75	81	Right-handed 310
Helix 135	AO9	l	82	87	Right-handed alpha
Helix 136	AP1	m	3	9	Right-handed 310
Helix 137	AP2	m	56	61	Right-handed alpha
Helix 138	AP3	m	68	72	Right-handed 310
Helix 139	AP4	m	75	81	Right-handed 310
Helix 140	AP5	m	82	87	Right-handed alpha
Helix 141	AP6	n	3	9	Right-handed 310
Helix 142	AP7	n	56	61	Right-handed alpha
Helix 143	AP8	n	68	72	Right-handed 310
Helix 144	AP9	n	75	81	Right-handed 310
Helix 145	AQ1	n	82	87	Right-handed alpha
Helix 146	AQ2	o	3	9	Right-handed 310
Helix 147	AQ3	o	56	61	Right-handed alpha
Helix 148	AQ4	o	68	72	Right-handed 310
Helix 149	AQ5	o	75	81	Right-handed 310
Helix 150	AQ6	o	82	87	Right-handed alpha

There are 15 sheets in PDB entry 6MB2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	12	22	first strand
Strand 2	a	25	36	anti-parallel
Strand 3	a	41	48	anti-parallel
Strand 4	a	217	227	anti-parallel
Strand 5	a	199	208	anti-parallel
Strand 6	a	148	155	anti-parallel
Strand 7	a	160	170	anti-parallel
Strand 8	a	176	187	anti-parallel
Strand 9	a	92	100	anti-parallel
Strand 10	a	105	115	anti-parallel
Strand 11	a	118	128	anti-parallel
Strand 12	a	12	22	parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	12	22	first strand
Strand 2	b	25	36	anti-parallel
Strand 3	b	41	48	anti-parallel
Strand 4	b	217	227	anti-parallel
Strand 5	b	199	208	anti-parallel
Strand 6	b	148	155	anti-parallel
Strand 7	b	160	170	anti-parallel
Strand 8	b	176	187	anti-parallel
Strand 9	b	92	100	anti-parallel
Strand 10	b	105	115	anti-parallel
Strand 11	b	118	128	anti-parallel
Strand 12	b	12	22	parallel

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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	12	22	first strand
Strand 2	c	25	36	anti-parallel
Strand 3	c	41	48	anti-parallel
Strand 4	c	217	227	anti-parallel
Strand 5	c	199	208	anti-parallel
Strand 6	c	148	155	anti-parallel
Strand 7	c	160	170	anti-parallel
Strand 8	c	176	187	anti-parallel
Strand 9	c	92	100	anti-parallel
Strand 10	c	105	115	anti-parallel
Strand 11	c	118	128	anti-parallel
Strand 12	c	12	22	parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	12	22	first strand
Strand 2	d	25	36	anti-parallel
Strand 3	d	41	48	anti-parallel
Strand 4	d	217	227	anti-parallel
Strand 5	d	199	208	anti-parallel
Strand 6	d	148	155	anti-parallel
Strand 7	d	160	170	anti-parallel
Strand 8	d	176	187	anti-parallel
Strand 9	d	92	100	anti-parallel
Strand 10	d	105	115	anti-parallel
Strand 11	d	118	128	anti-parallel
Strand 12	d	12	22	parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	12	22	first strand
Strand 2	e	25	36	anti-parallel
Strand 3	e	41	48	anti-parallel
Strand 4	e	217	227	anti-parallel
Strand 5	e	199	208	anti-parallel
Strand 6	e	148	155	anti-parallel
Strand 7	e	160	170	anti-parallel
Strand 8	e	176	187	anti-parallel
Strand 9	e	92	100	anti-parallel
Strand 10	e	105	115	anti-parallel
Strand 11	e	118	128	anti-parallel
Strand 12	e	12	22	parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	12	22	first strand
Strand 2	f	25	36	anti-parallel
Strand 3	f	41	48	anti-parallel
Strand 4	f	217	227	anti-parallel
Strand 5	f	199	208	anti-parallel
Strand 6	f	148	155	anti-parallel
Strand 7	f	160	170	anti-parallel
Strand 8	f	176	187	anti-parallel
Strand 9	f	92	100	anti-parallel
Strand 10	f	105	115	anti-parallel
Strand 11	f	118	128	anti-parallel
Strand 12	f	12	22	parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	12	22	first strand
Strand 2	g	25	36	anti-parallel
Strand 3	g	41	48	anti-parallel
Strand 4	g	217	227	anti-parallel
Strand 5	g	199	208	anti-parallel
Strand 6	g	148	155	anti-parallel
Strand 7	g	160	170	anti-parallel
Strand 8	g	176	187	anti-parallel
Strand 9	g	92	100	anti-parallel
Strand 10	g	105	115	anti-parallel
Strand 11	g	118	128	anti-parallel
Strand 12	g	12	22	parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	12	22	first strand
Strand 2	h	25	36	anti-parallel
Strand 3	h	41	48	anti-parallel
Strand 4	h	217	227	anti-parallel
Strand 5	h	199	208	anti-parallel
Strand 6	h	148	155	anti-parallel
Strand 7	h	160	170	anti-parallel
Strand 8	h	176	187	anti-parallel
Strand 9	h	92	100	anti-parallel
Strand 10	h	105	115	anti-parallel
Strand 11	h	118	128	anti-parallel
Strand 12	h	12	22	parallel

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There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	12	22	first strand
Strand 2	i	25	36	anti-parallel
Strand 3	i	41	48	anti-parallel
Strand 4	i	217	227	anti-parallel
Strand 5	i	199	208	anti-parallel
Strand 6	i	148	155	anti-parallel
Strand 7	i	160	170	anti-parallel
Strand 8	i	176	187	anti-parallel
Strand 9	i	92	100	anti-parallel
Strand 10	i	105	115	anti-parallel
Strand 11	i	118	128	anti-parallel
Strand 12	i	12	22	parallel

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There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	12	22	first strand
Strand 2	j	25	36	anti-parallel
Strand 3	j	41	48	anti-parallel
Strand 4	j	217	227	anti-parallel
Strand 5	j	199	208	anti-parallel
Strand 6	j	148	155	anti-parallel
Strand 7	j	160	170	anti-parallel
Strand 8	j	176	187	anti-parallel
Strand 9	j	92	100	anti-parallel
Strand 10	j	105	115	anti-parallel
Strand 11	j	118	128	anti-parallel
Strand 12	j	12	22	parallel

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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	12	22	first strand
Strand 2	k	25	36	anti-parallel
Strand 3	k	41	48	anti-parallel
Strand 4	k	217	227	anti-parallel
Strand 5	k	199	208	anti-parallel
Strand 6	k	148	155	anti-parallel
Strand 7	k	160	170	anti-parallel
Strand 8	k	176	187	anti-parallel
Strand 9	k	92	100	anti-parallel
Strand 10	k	105	115	anti-parallel
Strand 11	k	118	128	anti-parallel
Strand 12	k	12	22	parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	12	22	first strand
Strand 2	l	25	36	anti-parallel
Strand 3	l	41	48	anti-parallel
Strand 4	l	217	227	anti-parallel
Strand 5	l	199	208	anti-parallel
Strand 6	l	148	155	anti-parallel
Strand 7	l	160	170	anti-parallel
Strand 8	l	176	187	anti-parallel
Strand 9	l	92	100	anti-parallel
Strand 10	l	105	115	anti-parallel
Strand 11	l	118	128	anti-parallel
Strand 12	l	12	22	parallel

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There are 12 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	12	22	first strand
Strand 2	m	25	36	anti-parallel
Strand 3	m	41	48	anti-parallel
Strand 4	m	217	227	anti-parallel
Strand 5	m	199	208	anti-parallel
Strand 6	m	148	155	anti-parallel
Strand 7	m	160	170	anti-parallel
Strand 8	m	176	187	anti-parallel
Strand 9	m	92	100	anti-parallel
Strand 10	m	105	115	anti-parallel
Strand 11	m	118	128	anti-parallel
Strand 12	m	12	22	parallel

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There are 12 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	12	22	first strand
Strand 2	n	25	36	anti-parallel
Strand 3	n	41	48	anti-parallel
Strand 4	n	217	227	anti-parallel
Strand 5	n	199	208	anti-parallel
Strand 6	n	148	155	anti-parallel
Strand 7	n	160	170	anti-parallel
Strand 8	n	176	187	anti-parallel
Strand 9	n	92	100	anti-parallel
Strand 10	n	105	115	anti-parallel
Strand 11	n	118	128	anti-parallel
Strand 12	n	12	22	parallel

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There are 12 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	12	22	first strand
Strand 2	o	25	36	anti-parallel
Strand 3	o	41	48	anti-parallel
Strand 4	o	217	227	anti-parallel
Strand 5	o	199	208	anti-parallel
Strand 6	o	148	155	anti-parallel
Strand 7	o	160	170	anti-parallel
Strand 8	o	176	187	anti-parallel
Strand 9	o	92	100	anti-parallel
Strand 10	o	105	115	anti-parallel
Strand 11	o	118	128	anti-parallel
Strand 12	o	12	22	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MB2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MB2