Analysis of interatomic Contacts of Structural Units in PDB entry:
6MB4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MB4 entry

There are 4 chains in PDB entry 6MB4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	THR 271
B	SER 7	THR 271
C	SER 7	THR 271
D	SER 7	THR 271

There are 48 helices in PDB entry 6MB4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	22	Right-handed alpha
Helix 2	AA2	A	35	39	Right-handed 310
Helix 3	AA3	A	44	57	Right-handed alpha
Helix 4	AA4	A	70	76	Right-handed 310
Helix 5	AA5	A	83	88	Right-handed alpha
Helix 6	AA6	A	106	113	Right-handed alpha
Helix 7	AA7	A	133	139	Right-handed alpha
Helix 8	AA8	A	151	159	Right-handed alpha
Helix 9	AA9	A	169	173	Right-handed 310
Helix 10	AB1	A	174	183	Right-handed alpha
Helix 11	AB2	A	224	236	Right-handed alpha
Helix 12	AB3	A	254	269	Right-handed alpha
Helix 13	AB4	B	10	22	Right-handed alpha
Helix 14	AB5	B	35	39	Right-handed 310
Helix 15	AB6	B	44	57	Right-handed alpha
Helix 16	AB7	B	70	76	Right-handed 310
Helix 17	AB8	B	83	88	Right-handed alpha
Helix 18	AB9	B	106	113	Right-handed alpha
Helix 19	AC1	B	133	139	Right-handed alpha
Helix 20	AC2	B	151	159	Right-handed alpha
Helix 21	AC3	B	169	173	Right-handed 310
Helix 22	AC4	B	174	183	Right-handed alpha
Helix 23	AC5	B	224	236	Right-handed alpha
Helix 24	AC6	B	254	270	Right-handed alpha
Helix 25	AC7	C	10	22	Right-handed alpha
Helix 26	AC8	C	35	39	Right-handed 310
Helix 27	AC9	C	44	57	Right-handed alpha
Helix 28	AD1	C	70	76	Right-handed 310
Helix 29	AD2	C	83	88	Right-handed alpha
Helix 30	AD3	C	106	113	Right-handed alpha
Helix 31	AD4	C	133	139	Right-handed alpha
Helix 32	AD5	C	151	159	Right-handed alpha
Helix 33	AD6	C	169	173	Right-handed 310
Helix 34	AD7	C	174	183	Right-handed alpha
Helix 35	AD8	C	224	236	Right-handed alpha
Helix 36	AD9	C	254	269	Right-handed alpha
Helix 37	AE1	D	10	22	Right-handed alpha
Helix 38	AE2	D	35	39	Right-handed 310
Helix 39	AE3	D	44	57	Right-handed alpha
Helix 40	AE4	D	70	76	Right-handed 310
Helix 41	AE5	D	83	88	Right-handed alpha
Helix 42	AE6	D	106	113	Right-handed alpha
Helix 43	AE7	D	133	139	Right-handed alpha
Helix 44	AE8	D	151	159	Right-handed alpha
Helix 45	AE9	D	169	174	Right-handed 310
Helix 46	AF1	D	175	183	Right-handed alpha
Helix 47	AF2	D	224	236	Right-handed alpha
Helix 48	AF3	D	254	269	Right-handed alpha

There are 8 sheets in PDB entry 6MB4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	127	131	anti-parallel
Strand 3	A	61	65	anti-parallel
Strand 4	A	28	33	parallel
Strand 5	A	162	166	parallel
Strand 6	A	247	253	anti-parallel
Strand 7	A	240	244	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	199	first strand
Strand 2	A	202	211	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	127	131	anti-parallel
Strand 3	B	61	65	anti-parallel
Strand 4	B	28	33	parallel
Strand 5	B	162	166	parallel
Strand 6	B	247	253	anti-parallel
Strand 7	B	240	244	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	199	first strand
Strand 2	B	202	211	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	127	131	anti-parallel
Strand 3	C	61	65	anti-parallel
Strand 4	C	28	33	parallel
Strand 5	C	162	166	parallel
Strand 6	C	247	253	anti-parallel
Strand 7	C	240	244	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	199	first strand
Strand 2	C	202	211	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	127	131	anti-parallel
Strand 3	D	61	65	anti-parallel
Strand 4	D	28	33	parallel
Strand 5	D	162	166	parallel
Strand 6	D	247	253	anti-parallel
Strand 7	D	240	244	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	199	first strand
Strand 2	D	202	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MB4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MB4