Analysis of interatomic Contacts of Structural Units in PDB entry:
6MB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MB8 entry

There are 2 chains in PDB entry 6MB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7THR 271
B
 ALA 6GLY 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6MB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 22Right-handed alpha
Helix 2
AA2
A
35 39Right-handed 310
Helix 3
AA3
A
44 57Right-handed alpha
Helix 4
AA4
A
70 76Right-handed 310
Helix 5
AA5
A
83 88Right-handed alpha
Helix 6
AA6
A
106 113Right-handed alpha
Helix 7
AA7
A
133 139Right-handed alpha
Helix 8
AA8
A
151 159Right-handed alpha
Helix 9
AA9
A
169 174Right-handed 310
Helix 10
AB1
A
175 183Right-handed alpha
Helix 11
AB2
A
224 236Right-handed alpha
Helix 12
AB3
A
254 270Right-handed alpha
Helix 13
AB4
B
10 22Right-handed alpha
Helix 14
AB5
B
35 39Right-handed 310
Helix 15
AB6
B
44 57Right-handed alpha
Helix 16
AB7
B
70 76Right-handed 310
Helix 17
AB8
B
83 88Right-handed alpha
Helix 18
AB9
B
106 113Right-handed alpha
Helix 19
AC1
B
133 139Right-handed alpha
Helix 20
AC2
B
151 159Right-handed alpha
Helix 21
AC3
B
169 174Right-handed 310
Helix 22
AC4
B
175 183Right-handed alpha
Helix 23
AC5
B
224 236Right-handed alpha
Helix 24
AC6
B
254 270Right-handed alpha
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There are 4 sheets in PDB entry 6MB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
127 131anti-parallel
Strand 3
A
61 65anti-parallel
Strand 4
A
28 33parallel
Strand 5
A
162 166parallel
Strand 6
A
247 253anti-parallel
Strand 7
A
240 244anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 197first strand
Strand 2
A
204 211anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
127 131anti-parallel
Strand 3
B
61 65anti-parallel
Strand 4
B
28 33parallel
Strand 5
B
162 166parallel
Strand 6
B
247 253anti-parallel
Strand 7
B
240 244anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 197first strand
Strand 2
B
204 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il