Analysis of interatomic Contacts of Structural Units in PDB entry:
6MB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MB9 entry

There are 4 chains in PDB entry 6MB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7THR 271
B
 SER 7THR 271
C
 SER 7PRO 272
D
 SER 7THR 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 6MB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 22Right-handed alpha
Helix 2
AA2
A
35 38Right-handed 310
Helix 3
AA3
A
44 57Right-handed alpha
Helix 4
AA4
A
70 76Right-handed 310
Helix 5
AA5
A
83 88Right-handed alpha
Helix 6
AA6
A
101 104Right-handed 310
Helix 7
AA7
A
105 113Right-handed alpha
Helix 8
AA8
A
133 138Right-handed alpha
Helix 9
AA9
A
151 159Right-handed alpha
Helix 10
AB1
A
169 173Right-handed 310
Helix 11
AB2
A
174 183Right-handed alpha
Helix 12
AB3
A
224 236Right-handed alpha
Helix 13
AB4
A
254 269Right-handed alpha
Helix 14
AB5
B
10 22Right-handed alpha
Helix 15
AB6
B
35 38Right-handed 310
Helix 16
AB7
B
44 57Right-handed alpha
Helix 17
AB8
B
70 76Right-handed 310
Helix 18
AB9
B
83 88Right-handed alpha
Helix 19
AC1
B
101 104Right-handed 310
Helix 20
AC2
B
105 113Right-handed alpha
Helix 21
AC3
B
133 138Right-handed alpha
Helix 22
AC4
B
151 159Right-handed alpha
Helix 23
AC5
B
169 173Right-handed 310
Helix 24
AC6
B
174 183Right-handed alpha
Helix 25
AC7
B
224 236Right-handed alpha
Helix 26
AC8
B
254 269Right-handed alpha
Helix 27
AC9
C
10 22Right-handed alpha
Helix 28
AD1
C
35 38Right-handed 310
Helix 29
AD2
C
44 57Right-handed alpha
Helix 30
AD3
C
70 76Right-handed 310
Helix 31
AD4
C
83 90Right-handed 310
Helix 32
AD5
C
101 104Right-handed 310
Helix 33
AD6
C
105 113Right-handed alpha
Helix 34
AD7
C
133 139Right-handed alpha
Helix 35
AD8
C
151 159Right-handed alpha
Helix 36
AD9
C
169 173Right-handed 310
Helix 37
AE1
C
174 183Right-handed alpha
Helix 38
AE2
C
224 236Right-handed alpha
Helix 39
AE3
C
254 269Right-handed alpha
Helix 40
AE4
D
10 22Right-handed alpha
Helix 41
AE5
D
35 38Right-handed 310
Helix 42
AE6
D
44 57Right-handed alpha
Helix 43
AE7
D
70 76Right-handed 310
Helix 44
AE8
D
83 88Right-handed alpha
Helix 45
AE9
D
101 104Right-handed 310
Helix 46
AF1
D
105 113Right-handed alpha
Helix 47
AF2
D
133 139Right-handed alpha
Helix 48
AF3
D
151 159Right-handed alpha
Helix 49
AF4
D
169 173Right-handed 310
Helix 50
AF5
D
174 183Right-handed alpha
Helix 51
AF6
D
224 236Right-handed alpha
Helix 52
AF7
D
254 270Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6MB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
127 131anti-parallel
Strand 3
A
61 65anti-parallel
Strand 4
A
28 33parallel
Strand 5
A
162 166parallel
Strand 6
A
247 253anti-parallel
Strand 7
A
240 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 199first strand
Strand 2
A
202 211anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
127 131anti-parallel
Strand 3
B
61 65anti-parallel
Strand 4
B
28 33parallel
Strand 5
B
162 166parallel
Strand 6
B
247 253anti-parallel
Strand 7
B
240 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 199first strand
Strand 2
B
202 211anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 119first strand
Strand 2
C
127 131anti-parallel
Strand 3
C
61 65anti-parallel
Strand 4
C
28 33parallel
Strand 5
C
162 166parallel
Strand 6
C
247 253anti-parallel
Strand 7
C
240 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 199first strand
Strand 2
C
202 211anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 119first strand
Strand 2
D
127 131anti-parallel
Strand 3
D
61 65anti-parallel
Strand 4
D
28 33parallel
Strand 5
D
162 166parallel
Strand 6
D
247 253anti-parallel
Strand 7
D
240 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
190 199first strand
Strand 2
D
202 211anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il