Analysis of interatomic Contacts of Structural Units in PDB entry:
6MBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MBD entry

There are 4 chains in PDB entry 6MBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 170LEU 324
B
 GLY 170ASP 323
C
 ALA -3LYS 19
D
 ALA -2LYS 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6MBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
172 192Right-handed alpha
Helix 2
AA2
A
202 224Right-handed alpha
Helix 3
AA3
A
224 236Right-handed alpha
Helix 4
AA4
A
243 254Right-handed alpha
Helix 5
AA5
A
255 257Right-handed 310
Helix 6
AA6
A
260 282Right-handed alpha
Helix 7
AA7
A
287 309Right-handed alpha
Helix 8
AA8
A
310 320Right-handed alpha
Helix 9
AA9
B
172 192Right-handed alpha
Helix 10
AB1
B
202 224Right-handed alpha
Helix 11
AB2
B
224 236Right-handed alpha
Helix 12
AB3
B
243 254Right-handed alpha
Helix 13
AB4
B
255 257Right-handed 310
Helix 14
AB5
B
260 282Right-handed alpha
Helix 15
AB6
B
287 309Right-handed alpha
Helix 16
AB7
B
310 319Right-handed alpha
Helix 17
AB8
C
-2 19Right-handed alpha
Helix 18
AB9
D
-1 20Right-handed alpha
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There are no sheets in PDB entry 6MBD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il