Analysis of interatomic Contacts of Structural Units in PDB entry:
6MBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MBK entry

There are 4 chains in PDB entry 6MBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Y
 THR 66ASP 80
A
 SER 20GLU 502
Z
 THR 66ASP 80
B
 SER 20LYS 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6MBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 36Right-handed alpha
Helix 2
AA2
A
41 43Right-handed 310
Helix 3
AA3
A
44 62Right-handed alpha
Helix 4
AA4
A
73 76Right-handed 310
Helix 5
AA5
A
77 88Right-handed alpha
Helix 6
AA6
A
125 127Right-handed 310
Helix 7
AA7
A
130 135Right-handed alpha
Helix 8
AA8
A
138 143Right-handed alpha
Helix 9
AA9
A
145 151Right-handed alpha
Helix 10
AB1
A
151 165Right-handed alpha
Helix 11
AB2
A
171 176Right-handed alpha
Helix 12
AB3
A
184 188Right-handed 310
Helix 13
AB4
A
189 195Right-handed alpha
Helix 14
AB5
A
201 226Right-handed alpha
Helix 15
AB6
A
227 230Right-handed 310
Helix 16
AB7
A
239 254Right-handed alpha
Helix 17
AB8
A
272 276Right-handed 310
Helix 18
AB9
A
316 325Right-handed alpha
Helix 19
AC1
A
348 359Right-handed alpha
Helix 20
AC2
A
377 388Right-handed alpha
Helix 21
AC3
A
390 399Right-handed alpha
Helix 22
AC4
A
402 409Right-handed alpha
Helix 23
AC5
A
418 438Right-handed alpha
Helix 24
AC6
A
443 454Right-handed alpha
Helix 25
AC7
A
457 495Right-handed alpha
Helix 26
AC8
B
21 36Right-handed alpha
Helix 27
AC9
B
41 43Right-handed 310
Helix 28
AD1
B
44 62Right-handed alpha
Helix 29
AD2
B
73 76Right-handed 310
Helix 30
AD3
B
77 88Right-handed alpha
Helix 31
AD4
B
125 127Right-handed 310
Helix 32
AD5
B
130 135Right-handed alpha
Helix 33
AD6
B
138 145Right-handed alpha
Helix 34
AD7
B
145 151Right-handed alpha
Helix 35
AD8
B
151 165Right-handed alpha
Helix 36
AD9
B
171 176Right-handed alpha
Helix 37
AE1
B
184 188Right-handed 310
Helix 38
AE2
B
189 195Right-handed alpha
Helix 39
AE3
B
201 226Right-handed alpha
Helix 40
AE4
B
227 230Right-handed 310
Helix 41
AE5
B
232 236Right-handed 310
Helix 42
AE6
B
239 254Right-handed alpha
Helix 43
AE7
B
272 276Right-handed 310
Helix 44
AE8
B
316 325Right-handed alpha
Helix 45
AE9
B
348 360Right-handed alpha
Helix 46
AF1
B
377 388Right-handed alpha
Helix 47
AF2
B
390 399Right-handed alpha
Helix 48
AF3
B
402 409Right-handed alpha
Helix 49
AF4
B
418 438Right-handed alpha
Helix 50
AF5
B
443 454Right-handed alpha
Helix 51
AF6
B
457 495Right-handed alpha
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There are 8 sheets in PDB entry 6MBK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
307 310anti-parallel
Strand 4
A
277 278parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 123first strand
Strand 2
A
293 297anti-parallel
Strand 3
A
285 288anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
265 269anti-parallel
Strand 3
A
255 258anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 341first strand
Strand 2
A
364 370anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 100first strand
Strand 2
B
104 109anti-parallel
Strand 3
B
307 310anti-parallel
Strand 4
B
277 278parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 123first strand
Strand 2
B
293 297anti-parallel
Strand 3
B
285 288anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
265 269anti-parallel
Strand 3
B
255 258anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 341first strand
Strand 2
B
364 370anti-parallel
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