Analysis of interatomic Contacts of Structural Units in PDB entry:
6MBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MBP entry

There are 2 chains in PDB entry 6MBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 975SER 1235
B
 GLU 976SER 1235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6MBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1024 1028Right-handed 310
Helix 2
AA2
A
1042 1048Right-handed alpha
Helix 3
AA3
A
1088 1092Right-handed 310
Helix 4
AA4
A
1131 1135Right-handed alpha
Helix 5
AA5
A
1164 1168Right-handed 310
Helix 6
AA6
A
1212 1220Right-handed alpha
Helix 7
AA7
B
1024 1028Right-handed 310
Helix 8
AA8
B
1042 1048Right-handed alpha
Helix 9
AA9
B
1088 1092Right-handed 310
Helix 10
AB1
B
1131 1135Right-handed alpha
Helix 11
AB2
B
1164 1168Right-handed 310
Helix 12
AB3
B
1212 1220Right-handed alpha
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There are 10 sheets in PDB entry 6MBP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
977 980first strand
Strand 2
A
994 996anti-parallel
Strand 3
A
1097 1101parallel
Strand 4
A
1107 1111anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1008 1009first strand
Strand 2
A
1154 1162parallel
Strand 3
A
1126 1130anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1008 1009first strand
Strand 2
A
1154 1162parallel
Strand 3
A
1143 1146anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1071 1072first strand
Strand 2
A
1176 1182parallel
Strand 3
A
1192 1197anti-parallel
Strand 4
A
1120 1124anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1169 1170first strand
Strand 2
A
1208 1209parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
977 980first strand
Strand 2
B
994 996anti-parallel
Strand 3
B
1097 1101parallel
Strand 4
B
1107 1111anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1008 1009first strand
Strand 2
B
1154 1162parallel
Strand 3
B
1126 1130anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1008 1009first strand
Strand 2
B
1154 1162parallel
Strand 3
B
1143 1146anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1071 1072first strand
Strand 2
B
1176 1182parallel
Strand 3
B
1192 1197anti-parallel
Strand 4
B
1120 1124anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1169 1170first strand
Strand 2
B
1208 1209parallel
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