Analysis of interatomic Contacts of Structural Units in PDB entry:
6MBW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MBW entry

There are 2 chains in PDB entry 6MBW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 138	PRO 685
B	SER 138	PRO 685

There are 38 helices in PDB entry 6MBW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	183	Right-handed alpha
Helix 2	AA2	A	193	263	Right-handed alpha
Helix 3	AA3	A	274	302	Right-handed alpha
Helix 4	AA4	A	308	315	Right-handed alpha
Helix 5	AA5	A	316	331	Right-handed alpha
Helix 6	AA6	A	356	359	Right-handed 310
Helix 7	AA7	A	376	384	Right-handed alpha
Helix 8	AA8	A	471	473	Right-handed 310
Helix 9	AA9	A	474	489	Right-handed alpha
Helix 10	AB1	A	504	519	Right-handed alpha
Helix 11	AB2	A	526	537	Right-handed alpha
Helix 12	AB3	A	546	550	Right-handed 310
Helix 13	AB4	A	555	559	Right-handed alpha
Helix 14	AB5	A	569	584	Right-handed alpha
Helix 15	AB6	A	585	591	Right-handed alpha
Helix 16	AB7	A	603	607	Right-handed 310
Helix 17	AB8	A	647	654	Right-handed alpha
Helix 18	AB9	A	655	660	Right-handed alpha
Helix 19	AC1	A	674	680	Right-handed alpha
Helix 20	AC2	A	681	683	Right-handed 310
Helix 21	AC3	B	140	182	Right-handed alpha
Helix 22	AC4	B	198	263	Right-handed alpha
Helix 23	AC5	B	272	303	Right-handed alpha
Helix 24	AC6	B	309	331	Right-handed alpha
Helix 25	AC7	B	377	384	Right-handed alpha
Helix 26	AC8	B	471	473	Right-handed 310
Helix 27	AC9	B	474	489	Right-handed alpha
Helix 28	AD1	B	503	520	Right-handed alpha
Helix 29	AD2	B	526	538	Right-handed alpha
Helix 30	AD3	B	544	549	Right-handed alpha
Helix 31	AD4	B	554	560	Right-handed alpha
Helix 32	AD5	B	569	584	Right-handed alpha
Helix 33	AD6	B	585	591	Right-handed alpha
Helix 34	AD7	B	599	605	Right-handed alpha
Helix 35	AD8	B	648	654	Right-handed alpha
Helix 36	AD9	B	655	663	Right-handed alpha
Helix 37	AE1	B	675	680	Right-handed alpha
Helix 38	AE2	B	681	683	Right-handed 310

There are 11 sheets in PDB entry 6MBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	336	first strand
Strand 2	A	348	354	anti-parallel
Strand 3	A	411	419	anti-parallel
Strand 4	A	404	406	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	343	first strand
Strand 2	A	468	469	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	402	first strand
Strand 2	A	368	375	anti-parallel
Strand 3	A	440	450	anti-parallel
Strand 4	A	455	462	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	396	first strand
Strand 2	A	423	424	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	503	first strand
Strand 2	A	552	554	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	615	first strand
Strand 2	A	668	669	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	619	first strand
Strand 2	A	627	628	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	336	first strand
Strand 2	B	350	354	anti-parallel
Strand 3	B	411	416	anti-parallel
Strand 4	B	404	406	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	467	469	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	402	first strand
Strand 2	B	368	372	anti-parallel
Strand 3	B	443	450	anti-parallel
Strand 4	B	455	462	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	627	632	anti-parallel
Strand 3	B	614	619	anti-parallel
Strand 4	B	668	669	parallel
Strand 5	B	673	674	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MBW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MBW