Analysis of interatomic Contacts of Structural Units in PDB entry:
6MC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MC8 entry

There are 2 chains in PDB entry 6MC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 19ARG 294
B
 PRO 21ARG 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6MC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 30Right-handed alpha
Helix 2
AA2
A
31 33Right-handed 310
Helix 3
AA3
A
37 44Right-handed alpha
Helix 4
AA4
A
47 67Right-handed alpha
Helix 5
AA5
A
104 114Right-handed alpha
Helix 6
AA6
A
141 150Right-handed alpha
Helix 7
AA7
A
185 200Right-handed alpha
Helix 8
AA8
A
203 224Right-handed alpha
Helix 9
AA9
A
225 227Right-handed 310
Helix 10
AB1
A
230 237Right-handed alpha
Helix 11
AB2
A
238 242Right-handed 310
Helix 12
AB3
A
255 258Right-handed 310
Helix 13
AB4
A
259 291Right-handed alpha
Helix 14
AB5
B
22 30Right-handed alpha
Helix 15
AB6
B
31 33Right-handed 310
Helix 16
AB7
B
37 44Right-handed alpha
Helix 17
AB8
B
47 67Right-handed alpha
Helix 18
AB9
B
104 115Right-handed alpha
Helix 19
AC1
B
141 150Right-handed alpha
Helix 20
AC2
B
185 199Right-handed alpha
Helix 21
AC3
B
203 215Right-handed alpha
Helix 22
AC4
B
218 226Right-handed alpha
Helix 23
AC5
B
230 238Right-handed alpha
Helix 24
AC6
B
239 242Right-handed 310
Helix 25
AC7
B
253 258Right-handed 310
Helix 26
AC8
B
259 292Right-handed alpha
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There are 6 sheets in PDB entry 6MC8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 81first strand
Strand 2
A
86 93anti-parallel
Strand 3
A
96 100anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
165 172anti-parallel
Strand 3
A
159 162anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
165 172anti-parallel
Strand 3
A
175 181anti-parallel
Strand 4
A
247 253anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 82first strand
Strand 2
B
85 93anti-parallel
Strand 3
B
96 100anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
166 172anti-parallel
Strand 3
B
159 160anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
166 172anti-parallel
Strand 3
B
175 181anti-parallel
Strand 4
B
247 252anti-parallel
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